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[181120_at]

Description F11D11.6 /REP_DB=WormBase Gene ID /WP=CE15797 /TR=O62155 /GB=CAB04098.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 57
(-0.1)
A 		11.2
(-2.8)
A 		107.6
(3)
A 		8.2
(-3)
A 		99
B 52.1
(1.9)
A 		62.9
(3)
A 		63.2
(3)
A 		2.8
(-3)
A 		60
C 5.8
(-3)
A 		49.2
(2.4)
A 		54.2
(3)
A 		6
(-3)
A 		48
avr 38.3
(-0.2) 		41.1
(0.1) 		75
(3) 		5.7
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 89.8
(3)
A 		48.7
(0.1)
A 		54.7
(0.5)
A 		39
(-0.6)
A 		9
(-2.8)
A 		6.1
(-3)
A 		84
B 45.7
(3)
A 		24.5
(-0.1)
A 		5.2
(-3)
A 		37.6
(1.8)
A 		34.7
(1.4)
A 		20.8
(-0.7)
A 		41
C 16.3
(-2.1)
A 		53.5
(3)
A 		14.5
(-2.3)
A 		11.2
(-2.8)
A 		32.6
(0.1)
A 		9.7
(-3)
A 		44
avr 50.6
(3) 		42.2
(1.7) 		24.8
(-1) 		29.3
(-0.3) 		25.4
(-0.9) 		12.2
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 20.8
(1.4)
A 		2.4
(-2.7)
A 		28.1
(3)
A 		1.2
(-3)
A 		27
B 16.6
(3)
A 		15.5
(2.6)
A 		14.6
(2.3)
A 		0.6
(-3)
A 		16
C 1.9
(-2.7)
A 		14.1
(1.4)
A 		18.9
(3)
A 		1
(-3)
A 		18
avr 13.1
(0.7) 		10.7
(-0) 		20.5
(3) 		0.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 16.6
(2.7)
A 		17.3
(3)
A 		11.9
(0.9)
A 		9.9
(0.2)
A 		2.7
(-2.5)
A 		1.5
(-3)
A 		16
B 15.9
(3)
A 		8.1
(-0.2)
A 		1.3
(-3)
A 		10
(0.6)
A 		14.1
(2.3)
A 		7.8
(-0.3)
A 		15
C 6
(-1.4)
A 		16.3
(3)
A 		3.7
(-2.4)
A 		2.2
(-3)
A 		10.5
(0.5)
A 		3.3
(-2.5)
A 		14
avr 12.8
(2.3) 		13.9
(3) 		5.6
(-2.1) 		7.4
(-1) 		9.1
(0) 		4.2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12926
Sequence Type Exemplar sequence
Representative Public ID F11D11.6 NCBI
Target Description F11D11.6 /REP_DB=WormBase Gene ID /WP=CE15797 /TR=O62155 /GB=CAB04098.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075259 NCBI Caenorhabditis elegans F11D11.6 (F11D11.6) mRNA, complete cds. 11/11 None
F11D11.6 ENSEMBL cdna:known chromosome:CEL140:V:18752862:18755710:-1 gene:F11D11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039936 4/11 Cross Hyb Matching Probes None
SNAP00000039937 5/11 Cross Hyb Matching Probes None
GENEFINDER00000039953 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18752861-18755710(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.6
Entrez Gene 184353 Entrez gene
SwissProt O62155 EMBL-EBI
WormBase CE15797 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04098 Hypothetical protein F11D11.6 [Caenorhabditis elegans] ref|NP_507660.1| F11D11.6 [Caenorhabditis elegans] 0.0
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 1.0E-37
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 8.0E-27
Sequence
Target Sequence 
>C. ELEGANS:181120_AT
agtgctaacaggcctagcttctcacgaggagcgggtttgggttcaggatatgatcgtaca
agacaccgggatcactgcgcttttttggattggtggagaacgagattgtccgacagtccc
gtgcacgaaattccgatggacagacggctacaccagctcctatagcgctacagaaaccat
gccaattgagtctctcaccaactccgaccctattggaaaaaactgtttgatagtagttaa
tcccgatatttcttccctcatcactacttactcactcattttttttaactttcaacgtcc
ggaagttcaaatgccactgactcgagcaactcttgtcaatgcacctcggtacaatggaaa
agaaagccttgcgtcgttcatacgatcattgaatgtttatctggcaaagaggcgaaaagg
atacttccgtacttgctcacgggatccgttcgagacgcctacgacaagattcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTAACAGGCCTAGCTTCTCAC 469 59 477 Antisense
GGATCACTGCGCTTTTTTGGATTGG 556 511 545 Antisense
GAACGAGATTGTCCGACAGTCCCGT 637 347 574 Antisense
CAGTCCCGTGCACGAAATTCCGATG 601 207 590 Antisense
AAACCATGCCAATTGAGTCTCTCAC 477 123 650 Antisense
TAGTTAATCCCGATATTTCTTCCCT 611 651 710 Antisense
AAATGCCACTGACTCGAGCAACTCT 325 119 785 Antisense
CGAGCAACTCTTGTCAATGCACCTC 348 251 799 Antisense
AGAAAGCCTTGCGTCGTTCATACGA 310 71 837 Antisense
GATACTTCCGTACTTGCTCACGGGA 259 423 896 Antisense
CGAGACGCCTACGACAAGATTCCTG 391 249 927 Antisense
Sequence Source Affymetrix Proprietary Database