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[181119_s_at]

Description F42G2.6 /REP_DB=WormBase Gene ID /WP=CE10316 /TR=O17102 /GB=AAB70358.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 2.8
(-2.9)
A 		2.4
(-3)
A 		2
(-3)
A 		55.9
(3)
A 		54
B 23.5
(0.3)
A 		39.6
(3)
A 		3.4
(-3)
A 		29.4
(1.3)
A 		36
C 2
(-3)
A 		1.9
(-3)
A 		1.7
(-3)
A 		49.8
(3)
A 		48
avr 9.4
(-2) 		14.6
(-1.3) 		2.4
(-3) 		45
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 72.7
(3)
A 		10.5
(-2.3)
A 		27.5
(-0.8)
A 		46.8
(0.8)
A 		1.8
(-3)
A 		53.6
(1.4)
A 		71
B 28.4
(-0.8)
A 		17.9
(-3)
A 		43.5
(2.4)
A 		25.7
(-1.4)
A 		21.8
(-2.2)
A 		46.4
(3)
P 		29
C 7.6
(-2.5)
A 		19.4
(-0.6)
A 		9.6
(-2.2)
A 		14.2
(-1.4)
A 		4.7
(-3)
A 		41.4
(3)
A 		37
avr 36.2
(1.3) 		15.9
(-2) 		26.9
(-0.2) 		28.9
(0.1) 		9.4
(-3) 		47.1
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-2.6)
A 		0.5
(-3)
A 		0.5
(-3)
A 		8.2
(3)
A 		8
B 7.5
(1.5)
A 		9.8
(3)
A 		0.8
(-3)
A 		6.3
(0.7)
A 		9
C 0.7
(-2.8)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		8.4
(3)
A 		8
avr 3.1
(-0.9) 		3.6
(-0.4) 		0.6
(-3) 		7.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13.4
(3)
A 		3.7
(-1.5)
A 		6
(-0.4)
A 		11.9
(2.3)
A 		0.5
(-3)
A 		13.1
(2.9)
A 		13
B 9.9
(-0.9)
A 		6
(-3)
A 		10.6
(-0.6)
A 		6.8
(-2.6)
A 		8.8
(-1.5)
A 		17.3
(3)
P 		11
C 2.8
(-2.4)
A 		5.9
(-0.9)
A 		2.5
(-2.5)
A 		2.9
(-2.3)
A 		1.5
(-3)
A 		13.9
(3)
A 		12
avr 8.7
(-0.3) 		5.2
(-2.1) 		6.4
(-1.5) 		7.2
(-1.1) 		3.6
(-3) 		14.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181119_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4454
Sequence Type Exemplar sequence
Representative Public ID F42G2.6 NCBI
Target Description F42G2.6 /REP_DB=WormBase Gene ID /WP=CE10316 /TR=O17102 /GB=AAB70358.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061873(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061873 NCBI Caenorhabditis elegans F42G2.6 (F42G2.6) mRNA, complete cds. 10/11 None
SNAP00000009893 ENSEMBL cdna:SNAP chromosome:CEL140:II:2426488:2429926:-1 10/11 None
GENEFINDER00000009900 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2426488:2442445:-1 10/11 None
F42G2.6 ENSEMBL cdna:known chromosome:CEL140:II:2426407:2429945:-1 gene:F42G2.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2426458-2429925(-) 96.2 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G2.6
Entrez Gene 173597 Entrez gene
SwissProt O17102 EMBL-EBI
WormBase CE32659 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70358 Hypothetical protein F42G2.6 [Caenorhabditis elegans] ref|NP_494274.3| F42G2.6 [Caenorhabditis elegans] 0.0
blast CAE63901 Hypothetical protein CBG08472 [Caenorhabditis briggsae] 1.0E-26
blast CAE63901 Hypothetical protein CBG08472 [Caenorhabditis briggsae] 8.0E-26
blast AAN84852 Hypothetical protein C35E7.5b [Caenorhabditis elegans] ref|NP_871885.1| C35E7.5b [Caenorhabditis elegans] 7.0E-25
blast AAN84852 Hypothetical protein C35E7.5b [Caenorhabditis elegans] ref|NP_871885.1| C35E7.5b [Caenorhabditis elegans] 2.0E-23
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.9999998989515E-5
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.99999992421363E-5
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.017000000923872
Pfam IPR001356 EMBL-EBI Homeobox 0.0017
Pfam IPR001356 EMBL-EBI Homeobox 2.4E-6
Pfam IPR001356 EMBL-EBI Homeobox 2.4E-6
Sequence
Target Sequence 
>C. ELEGANS:181119_S_AT
gaagctcatggcacagttggctcgccgatgttgatagaaaagaaggaggagctggaagga
tccttagagcatcagcctacgatggcaaatgaagagattgaccagaatctgaaggaggag
accaccacgaaaccagaatataggaaaaagcttcgaatgagcaaacgtaagcaaaacgag
ttactacaaaagttatggttgaaggagaagaacacagaaaacactcacgccgaaaaaact
aatcaggaaaagaaattgactgaaaatgctgtacaagagcaattggagcaaatgatgaaa
atgatacaggaagagagaagagccgcagacagtaaaaaccttaaattagagcagatggtg
ctggaaatgaaggataaactggatgcacaagagacacgaatcaaggagttggaggaggtc
atcaaaagcgataagaacgctaagaaaggcgagcagttgaccgatctacggagccccaat
atactgaagctccaaatgcagaagtcggccataaatcgaatattagtagctcaatcggaa
atgacgttgatcttctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCATGGCACAGTTGGCTCGC 294 343 1906 Antisense
GCACAGTTGGCTCGCCGATGTTGAT 68 317 1916 Antisense
GAAGGATCCTTAGAGCATCAGCCTA 80 335 1960 Antisense
GAGCATCAGCCTACGATGGCAAATG 388 389 1972 Antisense
GAAGGAGGAGACCACCACGAAACCA 624 333 2016 Antisense
AGAACACAGAAAACACTCACGCCGA 506 73 2114 Antisense
GAAGAGCCGCAGACAGTAAAAACCT 622 337 2222 Antisense
AAAGGCGAGCAGTTGACCGATCTAC 686 119 2350 Antisense
CGATCTACGGAGCCCCAATATACTG 195 247 2367 Antisense
GCCCCAATATACTGAAGCTCCAAAT 250 273 2378 Antisense
TCGGAAATGACGTTGATCTTCTGGA 81 607 2440 Antisense
Sequence Source Affymetrix Proprietary Database