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[181118_at]

Description F14D2.6 /REP_DB=WormBase Gene ID /WP=CE16981 /TR=O44800 /GB=AAB94960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 3.4
(-3)
A 		40.1
(0.7)
A 		4.3
(-2.9)
A 		63.2
(3)
A 		60
B 2.7
(-3)
A 		6.9
(-2.3)
A 		17.8
(-0.4)
A 		37.9
(3)
A 		35
C 21.7
(1.3)
A 		5.8
(-3)
A 		24.7
(2.1)
A 		27.9
(3)
A 		22
avr 9.3
(-3) 		17.6
(-1.5) 		15.6
(-1.9) 		43
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 6.9
(-1.8)
A 		2.1
(-3)
A 		2.4
(-2.9)
A 		26
(2.9)
A 		5.5
(-2.2)
A 		26.4
(3)
A 		24
B 13.2
(-0.5)
A 		16.9
(0.3)
A 		1.4
(-3)
A 		7.7
(-1.7)
A 		29.9
(3)
A 		2.6
(-2.7)
A 		29
C 1.2
(-3)
A 		29.3
(3)
A 		11.2
(-0.9)
A 		7.9
(-1.6)
A 		2.2
(-2.8)
A 		27.4
(2.6)
A 		28
avr 7.1
(-2.1) 		16.1
(1.8) 		5
(-3) 		13.9
(0.9) 		12.5
(0.3) 		18.8
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-2.9)
A 		8.7
(2.6)
A 		1.1
(-3)
A 		9.2
(3)
A 		8
B 0.9
(-3)
A 		1.7
(-2.3)
A 		4.1
(-0.3)
A 		8.1
(3)
A 		7
C 7.2
(1.8)
A 		1.7
(-3)
A 		8.6
(3)
A 		4.7
(-0.4)
A 		7
avr 3.1
(-3) 		4
(-1.7) 		4.6
(-0.9) 		7.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.2)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		6.6
(3)
A 		1.7
(-1.8)
A 		6.4
(2.8)
A 		6
B 4.6
(-0.8)
A 		5.6
(-0.3)
A 		0.3
(-3)
A 		2
(-2.1)
A 		12.1
(3)
A 		1
(-2.6)
A 		12
C 0.4
(-3)
A 		8.9
(2.8)
A 		2.9
(-1.3)
A 		1.6
(-2.2)
A 		0.7
(-2.8)
A 		9.2
(3)
A 		9
avr 2.1
(-1.7) 		5.1
(2.4) 		1.2
(-3) 		3.4
(0.1) 		4.8
(2) 		5.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5935
Sequence Type Exemplar sequence
Representative Public ID F14D2.6 NCBI
Target Description F14D2.6 /REP_DB=WormBase Gene ID /WP=CE16981 /TR=O44800 /GB=AAB94960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062107 NCBI Caenorhabditis elegans F14D2.6 (F14D2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037088 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3329712:3334200:1 11/11 None
F14D2.6 ENSEMBL cdna:known chromosome:CEL140:II:3329712:3334200:1 gene:F14D2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037056 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3329710-3334199(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14D2.6
Entrez Gene 184457 Entrez gene
SwissProt O44800 EMBL-EBI
WormBase CE16981 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494508 F14D2.6 [Caenorhabditis elegans] gb|AAB94960.1| Hypothetical protein F14D2.6 [Caenorhabditis elegans] 0.0
blast AAC78172 Hypothetical protein K04F1.13 [Caenorhabditis elegans] ref|NP_503469.2| K04F1.13 [Caenorhabditis elegans] 6.0E-96
blast AAQ62448 Hypothetical protein K04F1.14b [Caenorhabditis elegans] ref|NP_001024029.1| K04F1.14b [Caenorhabditis elegans] 8.0E-96
blast AAC78172 Hypothetical protein K04F1.13 [Caenorhabditis elegans] ref|NP_503469.2| K04F1.13 [Caenorhabditis elegans] 9.0E-96
blast AAQ62448 Hypothetical protein K04F1.14b [Caenorhabditis elegans] ref|NP_001024029.1| K04F1.14b [Caenorhabditis elegans] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-30
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-30
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.1E-35
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-30
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494508.1 1 12-34
F14D2.6 1 12-34
GENEFINDER00000037088 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:181118_AT
ggtgatgttctaattaatgcgactaatgaagaatatgtcctgaatctgaaaaatactaaa
gttatctatggattgctggtagtgaagagtacagctaaactggagaatttggacttttta
gagaatttggagcaaatagtctccttggagaatagtacctccccaatcatccaactttcc
tctaacaaactcctccaaaatgtgaatttccctaaaattaagacccccctattctccccg
aaaaataaccactacatagagattgttgacaataaacaagagattatctatagtcagatg
agttgcttcaaacttcagaatttgacgtattcagtggttatttataataaacaaccatgc
aagtcactaccagatgtgcctgaaaccactacgaatacagtttacttacctgaaaccact
actacaatagcggttgacactgaaactgtgaccattgaaattgcagtgactaccactact
aactaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGATGTTCTAATTAATGCGACTA 164 501 2467 Antisense
GGAGAATAGTACCTCCCCAATCATC 541 517 2613 Antisense
TCCTCTAACAAACTCCTCCAAAATG 122 585 2644 Antisense
TCTCCCCGAAAAATAACCACTACAT 101 611 2699 Antisense
AAACAACCATGCAAGTCACTACCAG 304 129 2815 Antisense
GCAAGTCACTACCAGATGTGCCTGA 347 321 2825 Antisense
GATGTGCCTGAAACCACTACGAATA 249 409 2839 Antisense
TTACTTACCTGAAACCACTACTACA 523 677 2868 Antisense
CCACTACTACAATAGCGGTTGACAC 121 275 2882 Antisense
GACCATTGAAATTGCAGTGACTACC 600 383 2916 Antisense
GCAGTGACTACCACTACTAACTACA 484 311 2929 Antisense
Sequence Source Affymetrix Proprietary Database