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[181116_at]

Description F36A2.10 /REP_DB=WormBase Gene ID /WP=CE09949 /TR=Q9XVP1 /GB=CAB03064.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_highest_8_8 > 04      4grp_high_8_8 > 28      6grp_total > 98      4grp_total > 35      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 93.7
(-2.3)
P 		144.7
(3)
P 		87.1
(-3)
P 		139.1
(2.4)
P 		58
B 128.4
(-0.1)
P 		148.4
(3)
P 		110.3
(-3)
P 		114.6
(-2.3)
P 		38
C 99.9
(-2.6)
P 		189
(3)
P 		92.7
(-3)
P 		152.1
(0.7)
P 		96
avr 107.3
(-2) 		160.7
(3) 		96.7
(-3) 		135.3
(0.6) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 944
1 2 3 4 5 6 range
A 152.1
(-2.6)
A 		82.4
(-3)
P 		101.8
(-2.9)
A 		141.6
(-2.6)
P 		724
(1.1)
P 		1026.2
(3)
P 		944
B 124.3
(-2.6)
P 		102.4
(-2.9)
A 		88.2
(-3)
A 		125.4
(-2.6)
P 		697.3
(3)
P 		618.3
(2.2)
P 		609
C 143.8
(-2.7)
M 		135.3
(-2.7)
P 		101
(-3)
P 		212.3
(-2.2)
P 		618.6
(0.8)
P 		916.6
(3)
P 		816
avr 140.1
(-2.7) 		106.7
(-2.9) 		97
(-3) 		159.8
(-2.5) 		680
(1.6) 		853.7
(3) 		757
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 34.1
(3)
P 		31.4
(1.8)
P 		22.8
(-1.9)
P 		20.4
(-3)
P 		14
B 40.9
(3)
P 		36.6
(1.4)
P 		25.5
(-2.6)
P 		24.4
(-3)
P 		17
C 33.1
(-1.4)
P 		54.3
(3)
P 		32.3
(-1.6)
P 		25.6
(-3)
P 		29
avr 36
(1.3) 		40.8
(3) 		26.9
(-1.8) 		23.5
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 28
(-2.8)
A 		29.3
(-2.8)
P 		22.2
(-3)
A 		35.9
(-2.6)
P 		218.5
(2.2)
P 		249.9
(3)
P 		228
B 43.3
(-2.5)
P 		34.1
(-2.7)
A 		21.4
(-3)
A 		33.2
(-2.7)
P 		283.3
(3)
P 		230.6
(1.8)
P 		262
C 53.3
(-2.4)
M 		41.3
(-2.7)
P 		25.7
(-3)
P 		42.7
(-2.6)
P 		200.2
(0.7)
P 		306.8
(3)
P 		281
avr 41.5
(-2.5) 		34.9
(-2.7) 		23.1
(-3) 		37.3
(-2.6) 		234
(2.3) 		262.4
(3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.510
Sequence Type Exemplar sequence
Representative Public ID F36A2.10 NCBI
Target Description F36A2.10 /REP_DB=WormBase Gene ID /WP=CE09949 /TR=Q9XVP1 /GB=CAB03064.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059985 NCBI Caenorhabditis elegans F36A2.10 (F36A2.10) mRNA, complete cds. 11/11 None
SNAP00000004926 ENSEMBL cdna:SNAP chromosome:CEL140:I:8827701:8828202:-1 11/11 None
GENEFINDER00000004938 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8827701:8828202:-1 11/11 None
F36A2.10 ENSEMBL cdna:known chromosome:CEL140:I:8827628:8828212:-1 gene:F36A2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8827631-8828133(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A2.10
Entrez Gene 172694 Entrez gene
SwissProt Q9XVP1 EMBL-EBI
WormBase CE09949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03064 Hypothetical protein F36A2.10 [Caenorhabditis elegans] ref|NP_492386.1| F36A2.10 [Caenorhabditis elegans] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:181116_AT
gattcaagctgtccgaccaacggtccgcacccaaggagcggttactcgctctcaggctgc
tcttcgtggacatatggggatcactgactcttcgacttcgaccagttcatctcgaattcc
gaaggagaagttgaaaaagaaggcatcatctcgtagccgttcaagatcccgttcgaaatc
tactcgccgctcacgttcaaagtctactcgctcacgttccagatcgagatctcgaagccg
cagtagcactcgtggaaagaagcgtgctccaaagaaggcagttaccacgaaagccgctcg
atctatctctcccgtcaaagtgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAAGCTGTCCGACCAACGGTC 630 429 75 Antisense
AAGGAGCGGTTACTCGCTCTCAGGC 549 159 107 Antisense
GCTGCTCTTCGTGGACATATGGGGA 221 297 130 Antisense
ATATGGGGATCACTGACTCTTCGAC 618 21 146 Antisense
TTCGACTTCGACCAGTTCATCTCGA 352 697 165 Antisense
GAAGGCATCATCTCGTAGCCGTTCA 458 333 213 Antisense
AAGATCCCGTTCGAAATCTACTCGC 432 155 237 Antisense
TACTCGCTCACGTTCCAGATCGAGA 674 645 279 Antisense
TCGAGATCTCGAAGCCGCAGTAGCA 319 603 298 Antisense
TACCACGAAAGCCGCTCGATCTATC 511 649 357 Antisense
ATCTATCTCTCCCGTCAAAGTGAAA 578 31 375 Antisense
Sequence Source Affymetrix Proprietary Database