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[181115_at]

Description Y69E1A.8 /REP_DB=WormBase Gene ID /WP=CE22815 /TR=Q9XW35 /GB=CAA22260.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 65.1
(-1.8)
A 		42.9
(-3)
A 		72.4
(-1.4)
A 		153.8
(3)
A 		111
B 95.9
(3)
A 		74.1
(1.1)
A 		26.8
(-3)
A 		75.3
(1.2)
A 		69
C 63.7
(-1.6)
A 		37.8
(-3)
A 		61.6
(-1.7)
A 		150.1
(3)
A 		112
avr 74.9
(-1.1) 		51.6
(-3) 		53.6
(-2.8) 		126.4
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 109.7
(0.6)
A 		41.8
(-2.2)
A 		23.5
(-3)
A 		58.3
(-1.6)
A 		168.5
(3)
P 		137.6
(1.7)
P 		145
B 29.2
(-3)
A 		76.4
(-1.3)
A 		61.2
(-1.8)
A 		88.7
(-0.8)
A 		127.7
(0.6)
P 		193
(3)
P 		164
C 59.8
(-2.9)
A 		79.1
(-1.6)
A 		58.7
(-3)
A 		102.2
(0.1)
A 		123.1
(1.5)
P 		143.9
(3)
P 		85
avr 66.2
(-2) 		65.8
(-2) 		47.8
(-3) 		83.1
(-1.1) 		139.8
(2) 		158.2
(3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 23.7
(3)
A 		9.3
(-3)
A 		18.9
(1)
A 		22.5
(2.5)
A 		14
B 30.6
(3)
A 		18.3
(-0)
A 		6.2
(-3)
A 		16
(-0.6)
A 		24
C 21.1
(1.3)
A 		10.9
(-3)
A 		21.5
(1.4)
A 		25.3
(3)
A 		14
avr 25.1
(3) 		12.8
(-3) 		15.5
(-1.7) 		21.3
(1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 20.2
(-1)
A 		14.9
(-1.7)
A 		5.1
(-3)
A 		14.8
(-1.7)
A 		50.9
(3)
P 		33.5
(0.7)
P 		46
B 10.2
(-3)
A 		25.4
(-1.5)
A 		14.9
(-2.5)
A 		23.5
(-1.7)
A 		51.9
(1)
P 		72
(3)
P 		62
C 22.1
(-1.7)
A 		24.1
(-1.4)
A 		15
(-3)
A 		20.6
(-2)
A 		39.8
(1.5)
P 		48.2
(3)
P 		33
avr 17.5
(-2.1) 		21.5
(-1.5) 		11.7
(-3) 		19.6
(-1.8) 		47.5
(2.4) 		51.2
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8490
Sequence Type Exemplar sequence
Representative Public ID Y69E1A.8 NCBI
Target Description Y69E1A.8 /REP_DB=WormBase Gene ID /WP=CE22815 /TR=Q9XW35 /GB=CAA22260.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069644 NCBI Caenorhabditis elegans Y69E1A.8 (Y69E1A.8) mRNA, complete cds. 11/11 None
SNAP00000037378 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10966640:10968081:1 11/11 None
GENEFINDER00000037385 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10966770:10968081:1 11/11 None
Y69E1A.8 ENSEMBL cdna:known chromosome:CEL140:IV:10966640:10968081:1 gene:Y69E1A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10966775-10968087(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69E1A.8
Entrez Gene 190554 Entrez gene
SwissProt Q9XW35 EMBL-EBI
WormBase CE35696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22260 Hypothetical protein Y69E1A.8 [Caenorhabditis elegans] ref|NP_502045.2| Y69E1A.8 [Caenorhabditis elegans] 0.0
blast CAA22260 Hypothetical protein Y69E1A.8 [Caenorhabditis elegans] ref|NP_502045.2| Y69E1A.8 [Caenorhabditis elegans] 1.0E-178
blast CAE61967 Hypothetical protein CBG05967 [Caenorhabditis briggsae] 1.0E-133
blast CAE61967 Hypothetical protein CBG05967 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:181115_AT
cagagttcacacatccacgtattgaagctggcagaacacttcgatcatcggataccggtt
acggacttaagtctcttcaaacagattattctgacgataaattcttatattcggaaggct
ctggactgacaaagagtccaattgattatgatgtttaccaaatcatgggctccgcctcgg
acatcgaagagtctccaacaaagaatagcttccactcaactcttgaaaatctttccccaa
ttctgaaacatgacatggtggttgcatcatctagtgaaatttctacacaatcccaatcca
gcctgaaagccgtttttcatgaccttgtcgagctgaatcacatttttgctcaacaagtcg
aagaggccgaagctcaaagaagttcatttgatgattatgtaaactgtctcactactgcac
gttcattctcaaatatttctctttccactcatcatgatttagttactggtgaatcgtggt
ccgctccaacttccactgaagctaccgtagttgctccaaaaaattcgacgatgttctctc
atttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGTTCACACATCCACGTATTGA 155 207 470 Antisense
AGCTGGCAGAACACTTCGATCATCG 660 81 495 Antisense
TATTCGGAAGGCTCTGGACTGACAA 706 661 577 Antisense
CCGCCTCGGACATCGAAGAGTCTCC 109 263 641 Antisense
AAGAATAGCTTCCACTCAACTCTTG 40 153 670 Antisense
AAAGCCGTTTTTCATGACCTTGTCG 63 1 775 Antisense
CACTACTGCACGTTCATTCTCAAAT 459 197 879 Antisense
TTCTCTTTCCACTCATCATGATTTA 598 691 906 Antisense
GTTACTGGTGAATCGTGGTCCGCTC 223 441 931 Antisense
CTCCAACTTCCACTGAAGCTACCGT 282 237 953 Antisense
AATTCGACGATGTTCTCTCATTTGA 379 177 991 Antisense
Sequence Source Affymetrix Proprietary Database