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[181114_at]

Description F52H2.5 /REP_DB=WormBase Gene ID /WP=CE10872 /TR=O17396 /GB=AAB71315.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 43      4grp_high_8_8 > 13      6grp_highest_nonorm > 71      6grp_total > 20      4grp_total > 11      6grp_highest_sub > 03      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 318.9
(-1)
P 		299.3
(-1.7)
P 		261.8
(-3)
P 		433.7
(3)
M 		172
B 311.4
(-0.8)
P 		302.7
(-1)
P 		223.2
(-3)
P 		463
(3)
P 		240
C 314.7
(-2.7)
P 		352
(-1.4)
P 		307.3
(-3)
P 		478.8
(3)
P 		172
avr 315
(-1.4) 		318
(-1.3) 		264.1
(-3) 		458.5
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 222.8
(-3)
P 		502.9
(3)
P 		381.2
(0.4)
P 		441.6
(1.7)
P 		308.9
(-1.2)
P 		342.2
(-0.4)
P 		280
B 219.9
(-3)
P 		383.8
(3)
P 		346.6
(1.6)
P 		378.2
(2.8)
P 		288
(-0.5)
P 		344.7
(1.6)
P 		164
C 278.5
(-2.9)
P 		415.5
(1.7)
P 		452
(3)
P 		452.8
(3)
P 		277.7
(-2.9)
P 		274.2
(-3)
P 		179
avr 240.4
(-3) 		434.1
(3) 		393.3
(1.7) 		424.2
(2.7) 		291.5
(-1.4) 		320.4
(-0.5) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 116.1
(3)
P 		65
(-2.8)
P 		68.4
(-2.4)
P 		63.5
(-3)
M 		53
B 99.3
(3)
P 		74.8
(-0.1)
P 		51.7
(-3)
P 		98.7
(2.9)
P 		48
C 104.2
(2.3)
P 		101.2
(1.7)
P 		107.1
(3)
P 		80.7
(-3)
P 		26
avr 106.5
(3) 		80.3
(-2.1) 		75.7
(-3) 		81
(-2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 41.1
(-3)
P 		178.9
(3)
P 		83
(-1.2)
P 		112
(0.1)
P 		93.2
(-0.7)
P 		83.3
(-1.2)
P 		138
B 76.5
(-3)
P 		127.8
(2.9)
P 		84.2
(-2.1)
P 		100.2
(-0.3)
P 		117
(1.7)
P 		128.5
(3)
P 		52
C 103.2
(-0.8)
P 		126.8
(3)
P 		115.1
(1.1)
P 		91.1
(-2.8)
P 		89.9
(-3)
P 		91.8
(-2.7)
P 		37
avr 73.6
(-3) 		144.5
(3) 		94.1
(-1.3) 		101.1
(-0.7) 		100
(-0.8) 		101.2
(-0.7) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18620
Sequence Type Exemplar sequence
Representative Public ID F52H2.5 NCBI
Target Description F52H2.5 /REP_DB=WormBase Gene ID /WP=CE10872 /TR=O17396 /GB=AAB71315.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076061 NCBI Caenorhabditis elegans F52H2.5 (F52H2.5) mRNA, complete cds. 11/11 None
SNAP00000036207 ENSEMBL cdna:SNAP chromosome:CEL140:X:2558040:2559399:-1 11/11 None
GENEFINDER00000036217 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2558040:2559399:-1 11/11 None
F52H2.5 ENSEMBL cdna:known chromosome:CEL140:X:2558040:2559539:-1 gene:F52H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2558039-2559399(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H2.5
Entrez Gene 186133 Entrez gene
SwissProt O17396 EMBL-EBI
WormBase CE10872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71315 Hypothetical protein F52H2.5 [Caenorhabditis elegans] ref|NP_508462.1| F52H2.5 [Caenorhabditis elegans] 1.0E-161
blast CAE58860 Hypothetical protein CBG02087 [Caenorhabditis briggsae] 5.0E-42
Sequence
Target Sequence 
>C. ELEGANS:181114_AT
cgtggaagacatcgaggttcccgccaaactgactgcattcgccaatggtaatcgagctga
gatccacattccgaagagcaaaattgacgaactttccgaagagacaaatatcgataagct
accagctaacgaaaaagcagcgtttgaaatgcttcttaatcattttcttcatgagatgat
gcatatgtttggagctttccattctgatgttggaatcatgtccggagtcatccagttgtt
caatgaagaaaatcgtattgacttggccattttgttagatgatcactctgctcgaattgt
ttctgaaacccttattggtcaagtgctcccagatccaccagttgcaacatttgtgtatga
tgagaaagacagatcgctgaaattcgaaagcagtgcaggattccacacagtcatgtttct
gaacaactcctactacacaaatcgattctactattccgttgatatgaattttgaatgcat
tgttccaaaagattcggattgggattcgcttcttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGAAGACATCGAGGTTCCCGCC 556 243 264 Antisense
CCAAACTGACTGCATTCGCCAATGG 73 277 287 Antisense
ATCGAGCTGAGATCCACATTCCGAA 318 35 314 Antisense
ATGTCCGGAGTCATCCAGTTGTTCA 348 47 481 Antisense
GATCACTCTGCTCGAATTGTTTCTG 660 421 544 Antisense
TATTGGTCAAGTGCTCCCAGATCCA 350 665 576 Antisense
CCAGATCCACCAGTTGCAACATTTG 337 271 592 Antisense
GCAGGATTCCACACAGTCATGTTTC 618 311 658 Antisense
GTTTCTGAACAACTCCTACTACACA 35 451 678 Antisense
ACAAATCGATTCTACTATTCCGTTG 358 111 700 Antisense
TTCGGATTGGGATTCGCTTCTTGTT 125 695 756 Antisense
Sequence Source Affymetrix Proprietary Database