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[181113_at]

Description F40E10.5 /REP_DB=WormBase Gene ID /WP=CE05840 /TR=Q20202 /GB=CAA93666.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 62      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1280
1 2 3 4 range
A 95.3
(-3)
A 		1246.9
(2.5)
P 		1351.4
(3)
P 		95.2
(-3)
A 		1256
B 71.2
(-3)
A 		994.5
(2.2)
P 		1129.4
(3)
P 		89.7
(-2.9)
P 		1058
C 72.9
(-3)
A 		1075.3
(2.1)
P 		1251.3
(3)
P 		121.7
(-2.8)
A 		1178
avr 79.8
(-3) 		1105.6
(2.3) 		1244
(3) 		102.2
(-2.9) 		1164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 292.9
(-3)
P 		778
(3)
P 		341.5
(-2.4)
P 		630.4
(1.2)
P 		449.5
(-1.1)
P 		452.2
(-1)
P 		485
B 193.2
(-3)
P 		633
(3)
P 		310.3
(-1.4)
P 		503.3
(1.2)
P 		552
(1.9)
P 		369.1
(-0.6)
P 		440
C 227.7
(-3)
P 		563.1
(1.4)
P 		536.2
(1)
P 		415.9
(-0.6)
P 		689.4
(3)
P 		357.8
(-1.3)
P 		462
avr 237.9
(-3) 		658
(3) 		396
(-0.7) 		516.5
(1) 		563.6
(1.7) 		393
(-0.8) 		420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 34.7
(-2.6)
A 		270.7
(1.5)
P 		353.3
(3)
P 		13.9
(-3)
A 		339
B 22.7
(-2.9)
A 		245.6
(2.6)
P 		261.7
(3)
P 		19.1
(-3)
P 		243
C 24.1
(-2.9)
A 		309.1
(1.2)
P 		436.1
(3)
P 		20.5
(-3)
A 		416
avr 27.2
(-2.8) 		275.1
(1.6) 		350.4
(3) 		17.8
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 54
(-3)
P 		276.7
(3)
P 		74.4
(-2.5)
P 		159.9
(-0.1)
P 		135.6
(-0.8)
P 		110.1
(-1.5)
P 		223
B 67.2
(-3)
P 		210.7
(2.5)
P 		75.3
(-2.7)
P 		133.3
(-0.5)
P 		224.3
(3)
P 		137.6
(-0.3)
P 		157
C 84.4
(-3)
P 		171.8
(0.8)
P 		136.5
(-0.7)
P 		83.6
(-3)
P 		223.1
(3)
P 		119.8
(-1.4)
P 		140
avr 68.5
(-3) 		219.7
(3) 		95.4
(-1.9) 		125.6
(-0.7) 		194.3
(2) 		122.5
(-0.9) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17467
Sequence Type Exemplar sequence
Representative Public ID F40E10.5 NCBI
Target Description F40E10.5 /REP_DB=WormBase Gene ID /WP=CE05840 /TR=Q20202 /GB=CAA93666.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078040 NCBI Caenorhabditis elegans F40E10.5 (F40E10.5) mRNA, complete cds. 11/11 None
SNAP00000014851 ENSEMBL cdna:SNAP chromosome:CEL140:X:14701781:14703438:1 11/11 None
GENEFINDER00000014854 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14701781:14703438:1 11/11 None
F40E10.5 ENSEMBL cdna:known chromosome:CEL140:X:14701781:14703585:1 gene:F40E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14701780-14703438(+) 94.74 100.0
Public Domain and Genome References
Gene Title
Ensembl F40E10.5
Entrez Gene 185535 Entrez gene
SwissProt Q20202 EMBL-EBI
WormBase CE05840 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93666 Hypothetical protein F40E10.5 [Caenorhabditis elegans] ref|NP_510441.1| F40E10.5 [Caenorhabditis elegans] 1.0E-136
blast CAE63217 Hypothetical protein CBG07574 [Caenorhabditis briggsae] 1.0E-119
blast CAE70930 Hypothetical protein CBG17730 [Caenorhabditis briggsae] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181113_AT
tggcctcaccaccgaggaacgagacaaagttttcgctgggagatgtggaccatccttctt
gaaaaacgtgtcatccactgtgagagaggagttcaagaacgtctggttcgactataaact
tagcgttgttgagaaggagctcgcccttcagaagttggcttattctcttctcactggaga
atctcttgctctgttcaacaaatgggaggaggagctcaagacaagaaaggtagaggtcgc
tagaagactttccgagctttctccagatgccagaaaagccttcgaagaatggaaggagct
ccgtttgaatgaaaagaagttcttggcaggactttccaaggaaatccgcgatgagcttaa
gaaaatgttcatttcctccaaggataaggaagttgaagctaccactactacaactaccac
cactaccaccacaactaccacgaccgaagctccaactatgccggaagctgtttcttctac
caccgagcaatctaccaccaccactgccgctgccatcattgccgaagaaaccaaagaaaa
ggaattctcagccttcctttactctcagaccccagaggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCTCACCACCGAGGAACGAGAC 251 545 252 Antisense
GGAGATGTGGACCATCCTTCTTGAA 128 517 290 Antisense
AGCTCGCCCTTCAGAAGTTGGCTTA 634 79 389 Antisense
GGCTTATTCTCTTCTCACTGGAGAA 563 537 408 Antisense
ACTGGAGAATCTCTTGCTCTGTTCA 436 97 424 Antisense
TAGAAGACTTTCCGAGCTTTCTCCA 537 651 492 Antisense
GGAAGTTGAAGCTACCACTACTACA 141 531 639 Antisense
ACCGAAGCTCCAACTATGCCGGAAG 644 89 694 Antisense
TGCCGGAAGCTGTTTCTTCTACCAC 16 585 710 Antisense
AAGGAATTCTCAGCCTTCCTTTACT 311 161 790 Antisense
TTTACTCTCAGACCCCAGAGGAGCT 567 669 809 Antisense
Sequence Source Affymetrix Proprietary Database