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[181112_at]

Description C35E7.4 /REP_DB=WormBase Gene ID /WP=CE17517 /TR=O61772 /GB=AAC17520.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 51      4grp_high_8_8 > 25      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 597
1 2 3 4 range
A 763.4
(3)
P 		290.1
(-1.8)
P 		167.5
(-3)
P 		321.9
(-1.4)
P 		596
B 748.4
(3)
P 		205.8
(-2.7)
P 		174
(-3)
P 		239.8
(-2.3)
P 		574
C 686.4
(3)
P 		176
(-2.9)
P 		166.9
(-3)
P 		342.9
(-1)
P 		520
avr 732.7
(3) 		224
(-2.4) 		169.5
(-3) 		301.5
(-1.6) 		563

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 1019.8
(3)
P 		455
(-1.1)
P 		398.9
(-1.5)
P 		406.7
(-1.5)
P 		267.5
(-2.5)
P 		197.7
(-3)
P 		822
B 1052.4
(3)
P 		787.5
(1.1)
P 		611.3
(-0.2)
P 		417.9
(-1.7)
P 		330.9
(-2.3)
P 		237
(-3)
P 		815
C 896.1
(3)
P 		820.9
(2.3)
P 		292.5
(-2.4)
P 		541.1
(-0.2)
P 		281.1
(-2.5)
P 		225
(-3)
P 		671
avr 989.4
(3) 		687.8
(0.6) 		434.2
(-1.3) 		455.2
(-1.2) 		293.2
(-2.4) 		219.9
(-3) 		770
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 277.9
(3)
P 		63
(-2.5)
P 		43.8
(-3)
P 		47.1
(-2.9)
P 		234
B 238.7
(3)
P 		50.8
(-2.7)
P 		40.3
(-3)
P 		51.1
(-2.7)
P 		198
C 227.2
(3)
P 		50.6
(-3)
P 		58.2
(-2.7)
P 		57.8
(-2.8)
P 		177
avr 247.9
(3) 		54.8
(-2.8) 		47.4
(-3) 		52
(-2.9) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 188
(3)
P 		161.8
(1.9)
P 		86.9
(-1.3)
P 		103.1
(-0.6)
P 		80.7
(-1.6)
P 		48.1
(-3)
P 		140
B 366.2
(3)
P 		262.1
(0.8)
P 		148.4
(-1.7)
P 		110.7
(-2.5)
P 		134.4
(-2)
P 		88.4
(-3)
P 		278
C 332.1
(3)
P 		250.5
(1.1)
P 		74.5
(-3)
P 		108.8
(-2.2)
P 		91
(-2.6)
P 		75.3
(-3)
P 		258
avr 295.4
(3) 		224.8
(1.1) 		103.3
(-2.1) 		107.5
(-2) 		102
(-2.2) 		70.6
(-3) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1972
Sequence Type Exemplar sequence
Representative Public ID C35E7.4 NCBI
Target Description C35E7.4 /REP_DB=WormBase Gene ID /WP=CE17517 /TR=O61772 /GB=AAC17520.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060430 NCBI Caenorhabditis elegans C35E7.4 (C35E7.4) mRNA, complete cds. 11/11 None
SNAP00000013374 ENSEMBL cdna:SNAP chromosome:CEL140:I:10840031:10842741:1 11/11 None
GENEFINDER00000013386 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10840031:10842741:1 11/11 None
C35E7.4 ENSEMBL cdna:known chromosome:CEL140:I:10840022:10842933:1 gene:C35E7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10839961-10842672(+) 99.66 100.0
Public Domain and Genome References
Gene Title
Ensembl C35E7.4
Entrez Gene 172990 Entrez gene
SwissProt O61772 EMBL-EBI
WormBase CE29704 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17520 Hypothetical protein C35E7.4 [Caenorhabditis elegans] ref|NP_492831.2| C35E7.4 [Caenorhabditis elegans] 0.0
blast AAN84852 Hypothetical protein C35E7.5b [Caenorhabditis elegans] ref|NP_871885.1| C35E7.5b [Caenorhabditis elegans] 3.0E-57
blast AAC17521 Hypothetical protein C35E7.5a [Caenorhabditis elegans] ref|NP_492830.1| C35E7.5a [Caenorhabditis elegans] 3.0E-57
Sequence
Target Sequence 
>C. ELEGANS:181112_AT
ggagagcttgtgattcgcgtttttcatttcaaaagttcccgtttcacacttgtacgcccg
cttgtttttttgaagaaagagtgtgaaacttatgtgcaaaattccaagaaagaattagtt
ttggttctccacaaagcaatgaaacaagatccctctcttctcgatacttgtatcaagagg
tgccaatttccacatcagtttgtggatgtgaatccaggcgatgtcactaatatggtgata
gctcaagttcacgaggaaatcgacggtttgaaggatccagaacttgatgaaatttgcctg
aagacttgccagtttgtatttgaaaacatgaagcctgatgattctgctgaaaaacaagtg
gaatcttcggaagagcctgctaacccaatggacattgaacaatctgaaaaagactcagtt
gaagatctggaggcttcacgtgactgcaatcacaagcctgatgttcaagaagacgcctcc
agcgatggcactgaacaagattcagatttagatgatgatatctcagtgatatcaggagcc
ggctcttcggacagtggtttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAGCTTGTGATTCGCGTTTTTC 333 519 1450 Antisense
TCAAAAGTTCCCGTTTCACACTTGT 689 629 1478 Antisense
AATGAAACAAGATCCCTCTCTTCTC 503 163 1587 Antisense
CCTCTCTTCTCGATACTTGTATCAA 617 267 1601 Antisense
AATTTGCCTGAAGACTTGCCAGTTT 339 175 1740 Antisense
AGAGCCTGCTAACCCAATGGACATT 628 69 1821 Antisense
AGATCTGGAGGCTTCACGTGACTGC 507 65 1872 Antisense
GACTGCAATCACAAGCCTGATGTTC 16 375 1891 Antisense
ATGTTCAAGAAGACGCCTCCAGCGA 346 43 1910 Antisense
TCAGTGATATCAGGAGCCGGCTCTT 75 623 1972 Antisense
CCGGCTCTTCGGACAGTGGTTTGTC 283 263 1988 Antisense
Sequence Source Affymetrix Proprietary Database