[Home] | [Total List]

[181111_at]

Description C24G6.7 /REP_DB=WormBase Gene ID /WP=CE17463 /TR=O76386 /GB=AAC19214.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 49      6grp_cgc > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 4.4
(-3)
A 		184.9
(3)
P 		144.5
(1.7)
P 		71.2
(-0.8)
A 		181
B 18.6
(-2.6)
A 		158.2
(3)
P 		139.1
(2.2)
P 		9.1
(-3)
A 		149
C 2.2
(-3)
A 		213.3
(3)
P 		134.8
(0.8)
P 		32.6
(-2.1)
A 		211
avr 8.4
(-3) 		185.5
(3) 		139.5
(1.4) 		37.6
(-2) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 103.5
(1.4)
A 		131.1
(3)
P 		81.4
(0.1)
A 		27.9
(-3)
A 		115.5
(2.1)
M 		48.1
(-1.8)
A 		103
B 134.2
(2.4)
P 		143.9
(3)
P 		40.2
(-3)
A 		87.8
(-0.2)
A 		85.8
(-0.4)
P 		53.1
(-2.3)
A 		104
C 147.1
(3)
P 		126.9
(1.9)
P 		72
(-0.9)
M 		42.5
(-2.5)
A 		112.9
(1.2)
P 		32.8
(-3)
A 		114
avr 128.3
(2.6) 		134
(3) 		64.5
(-1.7) 		52.7
(-2.5) 		104.7
(1) 		44.7
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 1.6
(-3)
A 		40.1
(3)
P 		37.8
(2.6)
P 		10.4
(-1.6)
A 		39
B 5.9
(-2.4)
A 		39.1
(3)
P 		32.2
(1.9)
P 		1.9
(-3)
A 		37
C 0.7
(-3)
A 		61.3
(3)
P 		47
(1.6)
P 		5.5
(-2.5)
A 		61
avr 2.7
(-3) 		46.8
(3) 		39
(1.9) 		5.9
(-2.6) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.1
(-1.2)
A 		46.6
(3)
P 		17.7
(-1.4)
A 		7.1
(-3)
A 		34.9
(1.2)
M 		11.7
(-2.3)
A 		40
B 46.7
(2.8)
P 		47.9
(3)
P 		9.8
(-3)
A 		23.2
(-0.9)
A 		34.9
(1)
P 		19.8
(-1.4)
A 		38
C 54.5
(3)
P 		38.7
(0.9)
P 		18.3
(-1.7)
M 		8.5
(-3)
A 		36.5
(0.7)
P 		11
(-2.7)
A 		46
avr 40.1
(2.2) 		44.4
(3) 		15.3
(-2.5) 		12.9
(-3) 		35.4
(1.3) 		14.2
(-2.8) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11564
Sequence Type Exemplar sequence
Representative Public ID C24G6.7 NCBI
Target Description C24G6.7 /REP_DB=WormBase Gene ID /WP=CE17463 /TR=O76386 /GB=AAC19214.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072059 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-1) (grl-1) mRNA, complete cds. 11/11 None
SNAP00000033923 ENSEMBL cdna:SNAP chromosome:CEL140:V:5533467:5536440:-1 11/11 None
GENEFINDER00000033929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5533467:5536440:-1 11/11 None
C24G6.7 ENSEMBL cdna:known chromosome:CEL140:V:5533467:5536440:-1 gene:C24G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5533466-5536440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-1
Ensembl C24G6.7
Entrez Gene 182850 Entrez gene
SwissProt O76386 EMBL-EBI
WormBase CE17463 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19214 Ground-like (grd related) protein 1 [Caenorhabditis elegans] ref|NP_504460.1| GRound-Like (grd related) family member (grl-1) [Caenorhabditis elegans] 0.0
blast CAE64618 Hypothetical protein CBG09376 [Caenorhabditis briggsae] 1.0E-147
blast CAE61854 Hypothetical protein CBG05832 [Caenorhabditis briggsae] 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.1E-32
Sequence
Target Sequence 
>C. ELEGANS:181111_AT
gatactctccagaagcattcatcactcgaccacttccatatcgtccagtaccatatatgc
cagttcaacttccagctgcatgccaacagtacttccttcctccccagcgtccccaaccaa
tgccacaagttactcctcagattattcagcttccgtcagcttatgtaacagccccgccgg
ttacaattcgtcagcaaccattgtctattcttccgccaccgattaacgactgttgtggaa
agtgcggagcgccgtgcaagttcaggtcgaagaaaaatgtgattgccttggcatcaaaga
tcttcacagctcaatttgttccacgaagagacggagaagatgaggaagagccgaaggatc
cgaagtgtagcagtgaaaaattgaaggatctgatgaacaaatatatcacgcgaactgtgg
ctctgtcaaaacgtctaatccaaaagaatgcagaaagcgaactcggcggttatttttcgg
tattctgctcaatcgatgacttcagctatgtggctcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTCTCCAGAAGCATTCATCAC 119 425 479 Antisense
AACTTCCAGCTGCATGCCAACAGTA 644 137 545 Antisense
AATGCCACAAGTTACTCCTCAGATT 115 167 597 Antisense
TCCTCAGATTATTCAGCTTCCGTCA 533 591 612 Antisense
TCCGTCAGCTTATGTAACAGCCCCG 514 593 630 Antisense
GTCAGCAACCATTGTCTATTCTTCC 166 467 668 Antisense
AAAGTGCGGAGCGCCGTGCAAGTTC 389 121 717 Antisense
TATCACGCGAACTGTGGCTCTGTCA 528 659 882 Antisense
GGCTCTGTCAAAACGTCTAATCCAA 490 539 897 Antisense
GGTTATTTTTCGGTATTCTGCTCAA 166 507 946 Antisense
GATGACTTCAGCTATGTGGCTCGGA 518 411 973 Antisense
Sequence Source Affymetrix Proprietary Database