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[181110_at]

Description T16D1.1 /REP_DB=WormBase Gene ID /WP=CE04968 /TR=Q22526 /GB=AAA80131.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.2
(-1.9)
A 		7.2
(-3)
A 		12.6
(3)
A 		12.2
(2.6)
A 		5
B 5.4
(-1.3)
A 		3
(-2.4)
A 		14.8
(3)
A 		1.8
(-3)
A 		13
C 2.1
(-3)
A 		2.6
(-2.9)
A 		5.3
(-2.2)
A 		24.9
(3)
A 		23
avr 5.2
(-2.4) 		4.3
(-3) 		10.9
(1.6) 		13
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.1
(1.5)
A 		5.2
(-0.1)
A 		4.9
(-0.6)
A 		3.6
(-3)
A 		5
(-0.5)
A 		6.9
(3)
A 		3
B 7.9
(3)
A 		3.1
(-1.2)
A 		2.1
(-2)
A 		1
(-3)
A 		1.7
(-2.4)
A 		2.7
(-1.5)
A 		7
C 2.1
(-3)
A 		3.5
(-2)
A 		10.5
(3)
A 		2.8
(-2.5)
A 		5.8
(-0.4)
A 		10.2
(2.8)
A 		8
avr 5.4
(1.2) 		3.9
(-1) 		5.8
(1.8) 		2.5
(-3) 		4.2
(-0.5) 		6.6
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3
(1.9)
A 		1.6
(-3)
A 		3.3
(3)
A 		1.8
(-2.3)
A 		2
B 1.7
(-0.4)
A 		0.7
(-2.4)
A 		3.4
(3)
A 		0.4
(-3)
A 		3
C 0.7
(-3)
A 		0.8
(-2.8)
A 		1.9
(-0.9)
A 		4.2
(3)
A 		4
avr 1.8
(-0.5) 		1
(-3) 		2.9
(3) 		2.1
(0.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.1
(-1.7)
A 		1.8
(3)
A 		1.1
(-1.7)
A 		0.9
(-3)
A 		1.5
(1)
A 		1.7
(2.3)
A 		1
B 2.7
(3)
A 		1
(-1.3)
A 		0.5
(-2.5)
A 		0.3
(-3)
A 		0.7
(-2)
A 		1
(-1.3)
A 		2
C 0.8
(-2.6)
A 		1.1
(-1.9)
A 		2.7
(1.5)
A 		0.6
(-3)
A 		1.9
(-0.2)
A 		3.4
(3)
A 		3
avr 1.5
(0.9) 		1.3
(0) 		1.4
(0.4) 		0.6
(-3) 		1.4
(0.4) 		2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4931
Sequence Type Exemplar sequence
Representative Public ID T16D1.1 NCBI
Target Description T16D1.1 /REP_DB=WormBase Gene ID /WP=CE04968 /TR=Q22526 /GB=AAA80131.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062584 NCBI Caenorhabditis elegans T16D1.1 (T16D1.1) mRNA, complete cds. 11/11 None
T16D1.1 ENSEMBL cdna:known chromosome:CEL140:II:5241208:5241635:-1 gene:T16D1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026376 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5241205-5241633(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16D1.1
Entrez Gene 188550 Entrez gene
SwissProt Q22526 EMBL-EBI
WormBase CE04968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80131 Hypothetical protein T16D1.1 [Caenorhabditis elegans] ref|NP_494985.1| T16D1.1 [Caenorhabditis elegans] 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:181110_AT
agacaagtctcgagtggcacatgccagatccaaagggcggctacaactttcataagcaat
gtaggaagtgaggagataatcgaggaacggaaacaatggacattggatggacacttgctc
ggacatttccagagacgatgcgaggaaaacctgcgatgctgcgataatgtgatggagttg
agagcggtggagttgcgatggagatactgcgaagtttacgaaggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAAGTCTCGAGTGGCACATGCC 624 71 25 Antisense
GGCACATGCCAGATCCAAAGGGCGG 534 533 40 Antisense
CCAAAGGGCGGCTACAACTTTCATA 522 273 54 Antisense
GGACATTGGATGGACACTTGCTCGG 646 523 122 Antisense
GATGGACACTTGCTCGGACATTTCC 352 407 130 Antisense
GGACATTTCCAGAGACGATGCGAGG 440 525 145 Antisense
CGAGGAAAACCTGCGATGCTGCGAT 34 251 165 Antisense
TGCGATGCTGCGATAATGTGATGGA 147 585 176 Antisense
GTGATGGAGTTGAGAGCGGTGGAGT 393 483 193 Antisense
AGCGGTGGAGTTGCGATGGAGATAC 53 81 207 Antisense
GATACTGCGAAGTTTACGAAGGTTT 34 423 227 Antisense
Sequence Source Affymetrix Proprietary Database