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[181109_at]

Description B0507.2 /REP_DB=WormBase Gene ID /WP=CE07761 /TR=Q22885 /GB=AAB04821.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 61      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 73      6grp_total > 70      4grp_total > 05      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 625
1 2 3 4 range
A 644.7
(0.1)
P 		349.8
(-3)
P 		350.7
(-3)
P 		927.6
(3)
P 		578
B 528.5
(-2)
P 		583
(-1.4)
P 		439.5
(-3)
P 		965.6
(3)
P 		526
C 645
(0.1)
P 		340.6
(-3)
P 		410.1
(-2.3)
P 		926.7
(3)
P 		586
avr 606.1
(-0.7) 		424.5
(-2.7) 		400.1
(-3) 		940
(3) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 400.9
(-3)
P 		577.3
(2.3)
P 		443
(-1.7)
P 		599.7
(3)
P 		440.8
(-1.8)
P 		589.9
(2.7)
P 		199
B 528.4
(-1.2)
P 		488.5
(-2.4)
P 		551.7
(-0.6)
P 		670.4
(3)
P 		499
(-2.1)
P 		469.9
(-3)
P 		201
C 644.7
(0.4)
P 		486.7
(-1.7)
P 		727.7
(1.6)
P 		831.5
(3)
P 		393.8
(-3)
P 		566.6
(-0.6)
P 		438
avr 524.7
(-1.1) 		517.5
(-1.3) 		574.1
(0) 		700.5
(3) 		444.5
(-3) 		542.1
(-0.7) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 234.7
(3)
P 		75.9
(-3)
P 		91.7
(-2.4)
P 		135.8
(-0.7)
P 		159
B 168.5
(0.8)
P 		144
(-0.6)
P 		101.9
(-3)
P 		205.8
(3)
P 		104
C 213.5
(3)
P 		97.9
(-3)
P 		142.9
(-0.7)
P 		156.3
(0)
P 		116
avr 205.6
(3) 		105.9
(-3) 		112.2
(-2.6) 		166
(0.6) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 73.9
(-3)
P 		205.3
(3)
P 		96.5
(-2)
P 		152.1
(0.6)
P 		133
(-0.3)
P 		143.6
(0.2)
P 		131
B 183.9
(1.4)
P 		162.6
(-0.5)
P 		134
(-3)
P 		177.6
(0.8)
P 		202.7
(3)
P 		175.2
(0.6)
P 		69
C 238.9
(3)
P 		148.5
(-1.9)
P 		185.2
(0.1)
P 		167.2
(-0.9)
P 		127.4
(-3)
P 		189.7
(0.4)
P 		112
avr 165.6
(1.8) 		172.1
(3) 		138.6
(-3) 		165.6
(1.8) 		154.4
(-0.2) 		169.5
(2.5) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12338
Sequence Type Exemplar sequence
Representative Public ID B0507.2 NCBI
Target Description B0507.2 /REP_DB=WormBase Gene ID /WP=CE07761 /TR=Q22885 /GB=AAB04821.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072860 NCBI Caenorhabditis elegans B0507.2 (B0507.2) mRNA, complete cds. 11/11 None
SNAP00000006059 ENSEMBL cdna:SNAP chromosome:CEL140:V:8776926:8778948:1 11/11 None
GENEFINDER00000006064 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8776926:8778948:1 11/11 None
B0507.2 ENSEMBL cdna:known chromosome:CEL140:V:8776919:8779068:1 gene:B0507.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8775065-8779082(+) 99.45 99.45
Public Domain and Genome References
Gene Title
Ensembl B0507.2
Entrez Gene 179255 Entrez gene
SwissProt Q22885 EMBL-EBI
WormBase CE32561 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605058_AT similar to B0507.2 cfa
CANINE_2:CFA.2636.1.S1_AT similar to B0507.2 cfa
CANINE_2:CFAAFFX.20896.1.S1_AT similar to B0507.2 cfa
CHICKEN:GGA.11767.1.S1_S_AT similar to 0610010K06Rik protein gga
CHICKEN:GGA.8977.1.S1_AT similar to 0610010K06Rik protein gga
U133_X3P:HS.125594.0.A1_3P_AT chromosome 1 open reading frame 58 hs
HG-U133_PLUS_2:239078_AT chromosome 1 open reading frame 58 hs
HG-U133B:239078_AT chromosome 1 open reading frame 58 hs
HG-U95E:73904_AT chromosome 1 open reading frame 58 hs
HG-U95B:43364_AT Chromosome 1 open reading frame 58 hs
HG-U95C:52812_AT Chromosome 1 open reading frame 58 hs
HU35KSUBA:RC_AA446949_AT Chromosome 1 open reading frame 58 hs
U133_X3P:HS.6236.0.S1_3P_AT Chromosome 1 open reading frame 58 hs
U133_X3P:HS.146258.0.A1_3P_AT Chromosome 1 open reading frame 58 hs
HG-U133_PLUS_2:226128_AT Chromosome 1 open reading frame 58 hs
HG-U133B:226128_AT Chromosome 1 open reading frame 58 hs
HG-U133_PLUS_2:241908_AT Chromosome 1 open reading frame 58 hs
HG-U133B:241908_AT Chromosome 1 open reading frame 58 hs
HG-U95B:46197_AT Chromosome 1 open reading frame 58 hs
HG-U95C:63965_S_AT Chromosome 1 open reading frame 58 hs
HG-U95C:58118_R_AT Chromosome 1 open reading frame 58 hs
HG-U95C:63966_R_AT Chromosome 1 open reading frame 58 hs
MOUSE430_2:1430671_A_AT RIKEN cDNA 0610010K06 gene mm
MOUSE430A_2:1430671_A_AT RIKEN cDNA 0610010K06 gene mm
MOE430A:1430671_A_AT RIKEN cDNA 0610010K06 gene mm
MU11KSUBA:AA216813_S_AT RIKEN cDNA 0610010K06 gene mm
MG-U74AV2:96079_AT RIKEN cDNA 0610010K06 gene mm
MG-U74BV2:111157_AT RIKEN cDNA 0610010K06 gene mm
MG-U74BV2:110421_AT RIKEN cDNA 0610010K06 gene mm
MOE430A:1433463_AT RIKEN cDNA 0610010K06 gene mm
MOUSE430A_2:1433463_AT RIKEN cDNA 0610010K06 gene mm
MOUSE430_2:1433463_AT RIKEN cDNA 0610010K06 gene mm
MG-U74CV2:170080_I_AT RIKEN cDNA 0610010K06 gene, mRNA (cDNA clone MGC:40682 IMAGE:3498026) mm
MU19KSUBC:TC39638_AT RIKEN cDNA 0610010K06 gene, mRNA (cDNA clone MGC:40682 IMAGE:3498026) mm
Protein Similarities
Method ID Description E-Value
blast AAB04821 Hypothetical protein B0507.2 [Caenorhabditis elegans] ref|NP_505261.2| B0507.2 [Caenorhabditis elegans] 0.0
blast CAE57751 Hypothetical protein CBG00768 [Caenorhabditis briggsae] 0.0
blast AAH85420 Zgc:101706 [Danio rerio] ref|NP_001007428.1| hypothetical protein LOC492786 [Danio rerio] 1.0E-82
Sequence
Target Sequence 
>C. ELEGANS:181109_AT
gctgtaactgcatcgatattctcaaaagctgatcaatgcctgaataatttgcctgatgag
agttttgcgagatggagaagatatctgcaattgaagcatcatttctatttggcgtatgct
tttgccttcctcggacagaaacaactatcagaggataaatgtggagaagctgtgagagct
tgtaagcaaggaattgctgagtatggagttgctaaagaaatggcagcaatgtatgcaact
gcaactggtcctggaactcgtatcaagcctgagcaacacttgttcttcagaagaatcgag
ccattgctcaatcgacatttggaaaaagcggagcgagaaaatggattcatctatcatcaa
aaagttccagatgagattcctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTAACTGCATCGATATTCTCAA 666 295 850 Antisense
GATCAATGCCTGAATAATTTGCCTG 312 421 880 Antisense
GAAGCATCATTTCTATTTGGCGTAT 658 341 942 Antisense
ATTTGGCGTATGCTTTTGCCTTCCT 148 19 956 Antisense
CTTTTGCCTTCCTCGGACAGAAACA 91 219 968 Antisense
GGAATTGCTGAGTATGGAGTTGCTA 145 535 1039 Antisense
TGTATGCAACTGCAACTGGTCCTGG 710 559 1079 Antisense
TGGTCCTGGAACTCGTATCAAGCCT 15 551 1095 Antisense
AAGCCTGAGCAACACTTGTTCTTCA 29 149 1114 Antisense
CTTCAGAAGAATCGAGCCATTGCTC 257 219 1134 Antisense
AAAAAGTTCCAGATGAGATTCCTCA 178 129 1208 Antisense
Sequence Source Affymetrix Proprietary Database