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[181108_at]

Description F01F1.5 /REP_DB=WormBase Gene ID /WP=CE01231 /TR=Q19086 /GB=AAC46639.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 28      4grp_high_8_8 > 63      6grp_highest_nonorm > 66      6grp_total > 55      4grp_total > 40      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 1407.9
(0.2)
P 		1192.1
(-3)
P 		1526.1
(2)
P 		1594.9
(3)
P 		403
B 1434.6
(0.6)
P 		1291.7
(-1.8)
P 		1576.7
(3)
P 		1218.1
(-3)
P 		359
C 1266
(-3)
P 		1353.8
(-0.4)
P 		1470.1
(3)
P 		1383.4
(0.5)
P 		204
avr 1369.5
(-0.8) 		1279.2
(-3) 		1524.3
(3) 		1398.8
(-0.1) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 928
1 2 3 4 5 6 range
A 1833.4
(1)
P 		1377.2
(-3)
P 		2053.9
(3)
P 		1503.7
(-1.9)
P 		1378.9
(-3)
P 		1499.4
(-1.9)
P 		677
B 1639
(-1)
P 		1609.8
(-1.3)
P 		1540.7
(-2.1)
P 		1718.5
(-0)
P 		1460.9
(-3)
P 		1982.9
(3)
P 		522
C 1125.8
(-3)
P 		1487.1
(1.5)
P 		1576.3
(2.6)
P 		1605.9
(3)
P 		1191.5
(-2.2)
P 		1584.4
(2.7)
P 		480
avr 1532.7
(-0) 		1491.4
(-0.7) 		1723.6
(3) 		1609.4
(1.2) 		1343.8
(-3) 		1688.9
(2.5) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 512.6
(3)
P 		258.8
(-2.5)
P 		399
(0.6)
P 		233.5
(-3)
P 		279
B 457.5
(3)
P 		319
(-1.2)
P 		365.4
(0.2)
P 		259.6
(-3)
P 		198
C 419.1
(1)
P 		389.2
(0.4)
P 		512.4
(3)
P 		233.3
(-3)
P 		279
avr 463.1
(3) 		322.3
(-0.8) 		425.6
(2) 		242.1
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 417
1 2 3 4 5 6 range
A 338
(-3)
P 		489.8
(3)
P 		447.3
(1.3)
P 		381.4
(-1.3)
P 		416.1
(0.1)
P 		365.1
(-1.9)
P 		152
B 570.3
(0.2)
P 		535.8
(-0.3)
P 		374.1
(-3)
P 		455.2
(-1.7)
P 		593.5
(0.6)
P 		739.4
(3)
P 		365
C 417.3
(-0.3)
P 		453.7
(0.8)
P 		401.2
(-0.7)
P 		322.9
(-3)
P 		385.6
(-1.2)
P 		530.4
(3)
P 		208
avr 441.9
(-0.9) 		493.1
(1) 		407.5
(-2.2) 		386.5
(-3) 		465.1
(-0) 		545
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7695
Sequence Type Exemplar sequence
Representative Public ID F01F1.5 NCBI
Target Description F01F1.5 /REP_DB=WormBase Gene ID /WP=CE01231 /TR=Q19086 /GB=AAC46639.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065863 NCBI Caenorhabditis elegans Dipeptidyl Peptidase Four (IV) family member (dpf-4) (dpf-4) mRNA, complete cds. 11/11 None
SNAP00000009920 ENSEMBL cdna:SNAP chromosome:CEL140:III:5859582:5861761:1 11/11 None
GENEFINDER00000009935 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5859582:5861761:1 11/11 None
F01F1.5.1 ENSEMBL cdna:known chromosome:CEL140:III:5859258:5861847:1 gene:F01F1.5 11/11 None
F01F1.5.2 ENSEMBL cdna:known chromosome:CEL140:III:5859563:5861847:1 gene:F01F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5859580-5861760(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dpf-4
Ensembl F01F1.5
Entrez Gene 175821 Entrez gene
SwissProt Q19086 EMBL-EBI
WormBase CE01231 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249690_AT expressed protein at
Protein Similarities
Method ID Description E-Value
blast AAC46639 Dipeptidyl peptidase four (iv) family protein 4 [Caenorhabditis elegans] ref|NP_498264.1| Dipeptidyl Peptidase Four (IV) family member (dpf-4) [Caenorhabditis elegans] 0.0
blast CAE64382 Hypothetical protein CBG09069 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 1.5E-7
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:181108_AT
gggtatctgattctgagctgtcttatctcaccgaaaaatatcataaaagcagcagtttct
gtgtatggagttgctgatctattggctttagatgaagatactcataaactggaaagatgt
tacaatgagatgcttatcggaaaatatcctgagcaagcgagcatttacgaagaaagaagt
cccatttatcatattgataaaattagaactcctattgcattcttgcatggaagggaggat
acggtagtaccgatgagccaatctatcacaatgtatgagaagatccgtgctagtggagtt
acaactgctctgatgcttttcgatggagaaggacatggatttaggaatggacaagtgatc
aaggaaagcaccgaagccactttctactttttgatgaaggccgttggaattgaaccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTATCTGATTCTGAGCTGTCTTA 156 497 1444 Antisense
AGCTGTCTTATCTCACCGAAAAATA 605 61 1459 Antisense
TGGAGTTGCTGATCTATTGGCTTTA 116 549 1509 Antisense
AATATCCTGAGCAAGCGAGCATTTA 584 173 1586 Antisense
TAGAACTCCTATTGCATTCTTGCAT 341 651 1647 Antisense
TACCGATGAGCCAATCTATCACAAT 591 649 1691 Antisense
GAAGATCCGTGCTAGTGGAGTTACA 474 337 1722 Antisense
CAACTGCTCTGATGCTTTTCGATGG 422 187 1745 Antisense
GATCAAGGAAAGCACCGAAGCCACT 416 419 1800 Antisense
GAAGCCACTTTCTACTTTTTGATGA 366 345 1816 Antisense
GAAGGCCGTTGGAATTGAACCATCA 157 333 1839 Antisense
Sequence Source Affymetrix Proprietary Database