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[181107_at]

Description F18E3.4 /REP_DB=WormBase Gene ID /WP=CE07080 /TR=Q19561 /GB=AAK18938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 02      6grp_cgc > 29      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 3.3
(-3)
A 		4.5
(-2.9)
A 		3.7
(-3)
A 		132.1
(3)
A 		129
B 21.1
(3)
A 		8.9
(-1.5)
A 		4.8
(-3)
A 		10.7
(-0.8)
A 		16
C 8.3
(-2.9)
A 		9
(-2.9)
A 		5.6
(-3)
A 		156.1
(3)
A 		151
avr 10.9
(-2.6) 		7.5
(-2.8) 		4.7
(-3) 		99.6
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 28.7
(-0)
A 		9.3
(-2.4)
A 		8.6
(-2.5)
A 		5
(-2.9)
A 		4.4
(-3)
A 		53.3
(3)
A 		49
B 10.1
(-1.3)
A 		13.7
(-0.5)
A 		8.2
(-1.7)
A 		11
(-1.1)
A 		29.4
(3)
A 		2.6
(-3)
A 		27
C 3.4
(-3)
A 		15.5
(3)
A 		8.5
(-0.4)
A 		15
(2.8)
A 		3.3
(-3)
A 		3.9
(-2.7)
A 		12
avr 14.1
(-0) 		12.8
(-0.7) 		8.4
(-3) 		10.3
(-2) 		12.4
(-0.9) 		19.9
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.2
(-2.9)
A 		1
(-3)
A 		1
(-3)
A 		19.3
(3)
A 		18
B 6.7
(3)
A 		2.2
(-1.8)
A 		1.1
(-3)
A 		2.3
(-1.7)
A 		6
C 2.7
(-2.8)
A 		2.6
(-2.9)
A 		2
(-3)
A 		26.3
(3)
A 		24
avr 3.5
(-2.1) 		1.9
(-2.8) 		1.4
(-3) 		16
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.3
(-0.9)
A 		3.3
(-2)
A 		1.9
(-2.7)
A 		1.3
(-3)
A 		1.3
(-3)
A 		13
(3)
A 		12
B 3.5
(-1.6)
A 		4.6
(-1)
A 		2
(-2.4)
A 		2.9
(-2)
A 		11.9
(3)
A 		1
(-3)
A 		11
C 1.3
(-2.7)
A 		4.7
(3)
A 		2.2
(-1.2)
A 		3
(0.2)
A 		1.1
(-3)
A 		1.3
(-2.7)
A 		4
avr 3.4
(-0.3) 		4.2
(1.3) 		2
(-3) 		2.4
(-2.2) 		4.8
(2.4) 		5.1
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11523
Sequence Type Exemplar sequence
Representative Public ID F18E3.4 NCBI
Target Description F18E3.4 /REP_DB=WormBase Gene ID /WP=CE07080 /TR=Q19561 /GB=AAK18938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028647(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028647 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-68) (srw-68) mRNA, complete cds. 10/11 None
GENEFINDER00000036728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7427851:7433334:-1 11/11 None
F18E3.4b ENSEMBL cdna:known chromosome:CEL140:V:7427851:7429286:-1 gene:F18E3.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028646 8/11 Cross Hyb Matching Probes None
F18E3.4a 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
184640 2 1 NM_001028647 181107_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7427851-7428998(-) 100.0 100.0
Public Domain and Genome References
Ensembl F18E3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023818 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAW88402.1| Serpentine receptor, class w protein 68, isoform b [Caenorhabditis elegans] 0.0
blast NP_001023817 Serpentine Receptor, class W family member (srw-68) [Caenorhabditis elegans] gb|AAK18938.3| Serpentine receptor, class w protein 68, isoform a [Caenorhabditis elegans] 0.0
blast T29218 hypothetical protein F18E3.6 - Caenorhabditis elegans 1.0E-129
blast NP_504905 Serpentine Receptor, class W family member (srw-69) [Caenorhabditis elegans] gb|AAK18937.1| Serpentine receptor, class w protein 69 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023818.1 7 35-57,64-86,124-143,155-177,225-247,279-301,316-338
F18E3.4b 7 35-57,64-86,124-143,155-177,225-247,279-301,316-338
GENEFINDER00000036728 14 97-119,144-166,178-200,227-249,281-303,318-340,394-412,438-460,467-489,527-546,558-580,628-650,682-704,719-741
Sequence
Target Sequence 
>C. ELEGANS:181107_AT
aacaatgcactgggtttccaccaaatttttctatgcctcgatacaaatcctcattagaag
atataagtttaattaaacaccgcgctgatctattaatttttgttttcattgacggatttt
tcaaaattatccccgcgataatgttccctataataacatttttgttgatcaaacaactcc
gagcggctaattcaaaaagaagacagatatcacaacgaaatggatcggaaaatagtaatg
caacagatcagacaactaaactagtcacactaatggcagtcacatttattgcggctgagc
ttcctaatggaactatatacattatacaagtagtaatgtctgattacgctgcgattgtaa
aaattggttttggactcattgatattttggcaattttcgtagcattaaatgcaactattc
attgtttgatctgccttacagtgtcatcacattatcgaaaaactgtgaaagacgttttca
agtgctgcagaaaaaattccatcacaaaaatcgagccaacagtccctggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATGCACTGGGTTTCCACCAAA 337 133 338 Antisense
TCCACCAAATTTTTCTATGCCTCGA 522 587 354 Antisense
TATGCCTCGATACAAATCCTCATTA 229 655 369 Antisense
ACACCGCGCTGATCTATTAATTTTT 615 107 414 Antisense
ATTATCCCCGCGATAATGTTCCCTA 8 13 463 Antisense
GATCAAACAACTCCGAGCGGCTAAT 407 419 504 Antisense
TGGCAGTCACATTTATTGCGGCTGA 311 545 611 Antisense
TTGCGGCTGAGCTTCCTAATGGAAC 156 703 626 Antisense
TAATGTCTGATTACGCTGCGATTGT 555 635 671 Antisense
GATCTGCCTTACAGTGTCATCACAT 367 419 765 Antisense
AAAATCGAGCCAACAGTCCCTGGGA 156 133 844 Antisense
Sequence Source Affymetrix Proprietary Database