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[181106_at] 7TM chemoreceptor, srt family

Description F36H9.6 /REP_DB=WormBase Gene ID /WP=CE09972 /TR=O16624 /GB=AAB66094.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 03      6grp_cgc > 29      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 86.6
(-0.9)
A 		31.2
(-3)
A 		45.1
(-2.5)
A 		187.5
(3)
P 		156
B 40.3
(-2.4)
M 		44.2
(-2.3)
A 		25.5
(-3)
A 		182.1
(3)
P 		157
C 55.7
(-2.4)
A 		37.7
(-3)
A 		39.1
(-2.9)
A 		204.6
(3)
P 		167
avr 60.9
(-2.1) 		37.7
(-3) 		36.6
(-3) 		191.4
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 54.7
(-0.2)
A 		62.4
(0.3)
A 		30.5
(-1.7)
A 		9.7
(-3)
A 		71.1
(0.8)
A 		105.6
(3)
P 		96
B 70
(-0.3)
A 		56.1
(-1.6)
A 		46.6
(-2.4)
A 		40.4
(-3)
A 		71.6
(-0.2)
A 		106.1
(3)
P 		66
C 61.9
(-0.6)
A 		57.2
(-1.1)
A 		46.5
(-2.1)
A 		64.9
(-0.3)
A 		37.8
(-3)
A 		98.1
(3)
P 		60
avr 62.2
(-0.8) 		58.6
(-1.1) 		41.2
(-2.7) 		38.3
(-3) 		60.2
(-1) 		103.3
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 31.5
(3)
A 		6.8
(-3)
A 		11.8
(-1.8)
A 		27.4
(2)
P 		25
B 12.9
(-1.7)
M 		10.9
(-2.1)
A 		5.9
(-3)
A 		38.8
(3)
P 		33
C 18.5
(-1.1)
A 		10.8
(-3)
A 		13.6
(-2.3)
A 		34.5
(3)
P 		24
avr 21
(-0.1) 		9.5
(-3) 		10.4
(-2.8) 		33.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 10.1
(-1)
A 		22.2
(2.1)
A 		6.6
(-1.9)
A 		2.5
(-3)
A 		21.4
(1.9)
A 		25.7
(3)
P 		23
B 24.4
(-0.2)
A 		18.7
(-1.3)
A 		11.3
(-2.9)
A 		10.7
(-3)
A 		29.1
(0.8)
A 		39.6
(3)
P 		29
C 22.9
(0.2)
A 		17.5
(-1.4)
A 		11.8
(-3)
A 		13.1
(-2.6)
A 		12.2
(-2.9)
A 		32.8
(3)
P 		21
avr 19.1
(-0.4) 		19.5
(-0.3) 		9.9
(-2.7) 		8.8
(-3) 		20.9
(0) 		32.7
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15751
Sequence Type Exemplar sequence
Representative Public ID F36H9.6 NCBI
Target Description F36H9.6 /REP_DB=WormBase Gene ID /WP=CE09972 /TR=O16624 /GB=AAB66094.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071105 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-41) (srt-41) mRNA, complete cds. 11/11 None
F36H9.6 ENSEMBL cdna:known chromosome:CEL140:V:1799554:1802957:-1 gene:F36H9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1799681-1801470(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-41
Ensembl F36H9.6
Entrez Gene 185392 Entrez gene
WormBase CE38071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503506 Serpentine Receptor, class T family member (srt-41) [Caenorhabditis elegans] 0.0
blast NP_001024245 Serpentine Receptor, class T family member (srt-42) [Caenorhabditis elegans] gb|AAW57825.1| Serpentine receptor, class t protein 42, isoform b [Caenorhabditis elegans] 1.0E-165
blast AAZ91349 Serpentine receptor, class t protein 41 [Caenorhabditis elegans] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503506.2 7 41-63,75-97,112-134,155-177,205-227,247-269,274-296
F36H9.6 7 41-63,75-97,112-134,155-177,205-227,247-269,274-296
Sequence
Target Sequence 
>C. ELEGANS:181106_AT
gatttgcctacttttggtgctcaatcgagtcctggatatcctctttcccacattggtcaa
gaaatacttctccggctccagaaccactatggtactcatgattcctgtttgctatggctt
gtactttgcattcttcacgcctccattgttgttcacctcgaaatatcaagcatggttctt
tgacccgtttatctatgaaaacaaaacccttgagtaccaaaattttccacataccgccaa
caatttgttcatcgttgtcgccacttgtgcactctatggatacttctgcgcggctattgc
aaagcaattccggaaaagagtagagtctaccaacaagaaatcacatacccagattttcct
ccaatccactctaatctgtatggtcaacttcgtcgccgctatgatctacgtctacatgca
attcttcccggttgccgattttgtcatagtcatcggacacatctcatggcagcttggtca
cggatgccctgcattcatttatctgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGCCTACTTTTGGTGCTCAAT 541 427 258 Antisense
GGTACTCATGATTCCTGTTTGCTAT 274 505 348 Antisense
ATGGCTTGTACTTTGCATTCTTCAC 381 53 371 Antisense
TCGCCACTTGTGCACTCTATGGATA 419 599 515 Antisense
TACTTCTGCGCGGCTATTGCAAAGC 355 645 538 Antisense
CCTCCAATCCACTCTAATCTGTATG 434 267 615 Antisense
AATCTGTATGGTCAACTTCGTCGCC 593 167 630 Antisense
GCCGCTATGATCTACGTCTACATGC 524 285 652 Antisense
CTTCCCGGTTGCCGATTTTGTCATA 682 219 681 Antisense
ACACATCTCATGGCAGCTTGGTCAC 218 111 714 Antisense
TGCCCTGCATTCATTTATCTGTTCA 450 585 742 Antisense
Sequence Source Affymetrix Proprietary Database