[Home] | [Total List]

[181105_at]

Description D1014.8 /REP_DB=WormBase Gene ID /WP=CE27749 /TR=Q18919 /GB=AAA96286.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 83      6grp_total > 85      4grp_total > 38      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 317.9
(3)
P 		234.9
(-0.4)
P 		170
(-3)
P 		237.1
(-0.3)
P 		148
B 327.4
(3)
P 		258.6
(0)
P 		189.7
(-3)
P 		265.6
(0.3)
P 		138
C 363.9
(3)
P 		216.3
(-3)
P 		239.3
(-2.1)
P 		258.3
(-1.3)
P 		148
avr 336.4
(3) 		236.6
(-1.4) 		199.7
(-3) 		253.7
(-0.6) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 372.9
(-3)
P 		409.7
(-1.8)
P 		412.2
(-1.8)
P 		564.4
(3)
P 		460.3
(-0.3)
P 		526.5
(1.8)
P 		192
B 296.3
(-3)
P 		413.4
(-0.4)
P 		393
(-0.8)
P 		447.2
(0.4)
P 		519.7
(2)
P 		565.2
(3)
P 		269
C 343.6
(-3)
P 		415.3
(-1.4)
P 		415.4
(-1.4)
P 		604.7
(3)
P 		395.7
(-1.8)
P 		559.1
(2)
P 		261
avr 337.6
(-3) 		412.8
(-0.9) 		406.9
(-1) 		538.8
(2.7) 		458.6
(0.4) 		550.3
(3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 115.8
(3)
P 		51
(-1.8)
P 		44.4
(-2.3)
P 		34.7
(-3)
P 		81
B 104.4
(3)
P 		63.9
(-1)
P 		44
(-3)
P 		56.6
(-1.7)
P 		60
C 120.4
(3)
P 		62.2
(-1.5)
P 		83.4
(0.1)
P 		43.5
(-3)
P 		77
avr 113.5
(3) 		59
(-1.8) 		57.3
(-1.9) 		44.9
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 68.7
(-3)
P 		145.7
(3)
P 		89.8
(-1.4)
P 		143.1
(2.8)
P 		138.9
(2.5)
P 		128.2
(1.6)
P 		77
B 103.1
(-2.6)
P 		137.6
(-0.8)
P 		95.4
(-3)
P 		118.4
(-1.8)
P 		211.1
(3)
P 		210.8
(3)
P 		116
C 127.3
(-1.4)
P 		126.7
(-1.5)
P 		105.7
(-3)
P 		121.6
(-1.8)
P 		128
(-1.4)
P 		187.2
(3)
P 		82
avr 99.7
(-2.8) 		136.7
(0) 		97
(-3) 		127.7
(-0.7) 		159.3
(1.8) 		175.4
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12219
Sequence Type Exemplar sequence
Representative Public ID D1014.8 NCBI
Target Description D1014.8 /REP_DB=WormBase Gene ID /WP=CE27749 /TR=Q18919 /GB=AAA96286.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072697 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-1) (spr-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000031806 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8129482:8131940:-1 11/11 None
D1014.8 ENSEMBL cdna:known chromosome:CEL140:V:8129336:8131943:-1 gene:D1014.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031799 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8129482-8130530(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spr-1
Ensembl D1014.8
Entrez Gene 179192 Entrez gene
SwissProt Q18919 EMBL-EBI
WormBase CE27749 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505098 Suppressor of PResenilin defect family member (spr-1) [Caenorhabditis elegans] gb|AAN59932.1| suppressor of presenilin defect [Caenorhabditis elegans] gb|AAA96286.2| Suppressor of presenilin defect protein 1 [Caenorhabditis elegans] sp|Q18919|SPR1_CAEEL Suppressor of presenilin 1 gb|AAN62581.1| suppressor of presenilin 1 [Caenorhabditis elegans] 0.0
blast T29614 hypothetical protein D1014.9 - Caenorhabditis elegans 1.0E-125
blast AAF36052 Hypothetical protein Y74C9A.4a [Caenorhabditis elegans] ref|NP_490663.1| Y74C9A.4a [Caenorhabditis elegans] 8.0E-71
blast AAF36052 Hypothetical protein Y74C9A.4a [Caenorhabditis elegans] ref|NP_490663.1| Y74C9A.4a [Caenorhabditis elegans] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 3.3E-7
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 6.9E-10
Pfam IPR000949 EMBL-EBI ELM2 domain 1.3E-11
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 6.9E-10
Sequence
Target Sequence 
>C. ELEGANS:181105_AT
aaattccatcttcatcatgtacagaaaatggcaatgtaggagagacatcgagcccatctg
cacagaaaactgagatacaaagcgagtctgatggttctgggcctctcatctggaggcata
aaaagacagtttgtatggaagagattgaagttctggctgatgattctcgtcgtaaaatgt
ttgaagcttgtcagcatgggagtaaagtggacattaaattagttgcatcgtggaaaaatg
atatgacaaatctgagaaagcgagttgagcaaacctactacgatcctgatctcaatccca
cataccttttctctcatgatcgagtgcattactctcaagattggacacagctggaaagat
cacaagttatcagatgtttcaacatgtatggagctcatttcgaacacatcgctgatgtta
tcggaacaaaaactcctgaccaagtctaccaattttacttggaaaatcaaaaagcgattg
acgctgccgatgaagagttccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCATCTTCATCATGTACAGA 3 117 251 Antisense
TGTAGGAGAGACATCGAGCCCATCT 248 559 285 Antisense
AAAGCGAGTCTGATGGTTCTGGGCC 540 123 329 Antisense
GTTCTGGGCCTCTCATCTGGAGGCA 134 443 344 Antisense
TGAGCAAACCTACTACGATCCTGAT 305 569 516 Antisense
TACTACGATCCTGATCTCAATCCCA 536 645 526 Antisense
ACATACCTTTTCTCTCATGATCGAG 464 105 550 Antisense
AGTGCATTACTCTCAAGATTGGACA 120 61 573 Antisense
GGAGCTCATTTCGAACACATCGCTG 520 521 640 Antisense
AAAACTCCTGACCAAGTCTACCAAT 437 129 679 Antisense
TGACGCTGCCGATGAAGAGTTCCTA 7 569 729 Antisense
Sequence Source Affymetrix Proprietary Database