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[181104_at]

Description T11F1.3 /REP_DB=WormBase Gene ID /WP=CE20054 /TR=Q9U8C6 /GB=AAC68710.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 2.6
(-3)
A 		3.9
(1.3)
A 		4.4
(3)
A 		3.3
(-0.7)
A 		2
B 5.9
(-2.5)
A 		5.3
(-2.7)
A 		4.5
(-3)
A 		19.8
(3)
A 		15
C 3.3
(-3)
A 		6.6
(-2.6)
A 		3.4
(-3)
A 		55.3
(3)
A 		52
avr 3.9
(-3) 		5.3
(-2.6) 		4.1
(-2.9) 		26.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.3
(-2.6)
A 		17.7
(3)
A 		5.6
(-1.7)
A 		4.6
(-2.1)
A 		3.4
(-2.6)
A 		2.4
(-3)
A 		15
B 22.8
(1.3)
A 		23.4
(1.5)
A 		2.3
(-3)
A 		30.6
(3)
A 		4.2
(-2.6)
A 		3.9
(-2.7)
A 		28
C 4.7
(-2.4)
A 		6.9
(-1.4)
A 		17.3
(3)
A 		3.2
(-3)
A 		12.8
(1.1)
A 		7.3
(-1.3)
A 		14
avr 10.3
(0) 		16
(3) 		8.4
(-1) 		12.8
(1.3) 		6.8
(-1.8) 		4.5
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(2)
A 		0.8
(0)
A 		1.1
(3)
A 		0.5
(-3)
A 		1
B 1.9
(-1.5)
A 		1.3
(-2.6)
A 		1.1
(-3)
A 		4.2
(3)
A 		3
C 1.1
(-3)
A 		1.9
(-2.4)
A 		1.2
(-2.9)
A 		9.3
(3)
A 		8
avr 1.3
(-2.7) 		1.3
(-2.7) 		1.1
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.3
(3)
A 		1.2
(-2.4)
A 		1.2
(-2.4)
A 		1
(-2.6)
A 		0.6
(-3)
A 		6
B 7.9
(2.8)
A 		7.8
(2.8)
A 		0.6
(-3)
A 		8.1
(3)
A 		1.7
(-2.1)
A 		1.4
(-2.4)
A 		8
C 1.8
(-1.1)
A 		2.1
(-0.6)
A 		4.4
(3)
A 		0.6
(-3)
A 		4.1
(2.5)
A 		2.4
(-0.2)
A 		4
avr 3.4
(-0.1) 		5.4
(3) 		2.1
(-2.1) 		3.3
(-0.2) 		2.3
(-1.8) 		1.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5031
Sequence Type Exemplar sequence
Representative Public ID T11F1.3 NCBI
Target Description T11F1.3 /REP_DB=WormBase Gene ID /WP=CE20054 /TR=Q9U8C6 /GB=AAC68710.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062009 NCBI Caenorhabditis elegans T11F1.3 (T11F1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000009459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2955477:2962388:1 11/11 None
T11F1.3 ENSEMBL cdna:known chromosome:CEL140:II:2955477:2955929:1 gene:T11F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2955475-2955928(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F1.3
Entrez Gene 188411 Entrez gene
SwissProt Q9U8C6 EMBL-EBI
WormBase CE20054 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68709 Hypothetical protein T11F1.2 [Caenorhabditis elegans] ref|NP_494411.1| T11F1.2 [Caenorhabditis elegans] 0.0
blast AAC68708 Serpentine receptor, class w protein 60 [Caenorhabditis elegans] ref|NP_494412.2| Serpentine Receptor, class W family member (srw-60) [Caenorhabditis elegans] 1.0E-130
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 1.0E-111
blast AAC68710 Hypothetical protein T11F1.3 [Caenorhabditis elegans] ref|NP_494410.1| T11F1.3 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.5E-32
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.9E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009459 3 657-674,702-724,739-756
Sequence
Target Sequence 
>C. ELEGANS:181104_AT
taaacttccgaaaacacataattgcacgtttttcaggaaactgtccaactggcacagtgg
tattttgatttctttggagcagaaggtcacgggttcaatccccgccagggaaactgtcca
actggcacagtggtattttgatttctttggagcagaaggtcacgggttcaatccccgaga
gggaaactgtccaactggcgcaggggtatatttgacatctttggagcagaaggtcacggg
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACTTCCGAAAACACATAATTGC 574 639 21 Antisense
ACACATAATTGCACGTTTTTCAGGA 507 111 34 Antisense
GCACGTTTTTCAGGAAACTGTCCAA 631 313 44 Antisense
AGGAAACTGTCCAACTGGCACAGTG 476 55 55 Antisense
CCCGCCAGGGAAACTGTCCAACTGG 201 261 121 Antisense
CAGGGAAACTGTCCAACTGGCACAG 105 207 126 Antisense
TCCCCGAGAGGGAAACTGTCCAACT 558 587 192 Antisense
AACTGTCCAACTGGCGCAGGGGTAT 24 143 205 Antisense
GGCGCAGGGGTATATTTGACATCTT 188 543 217 Antisense
GGGGTATATTTGACATCTTTGGAGC 576 497 223 Antisense
ATCTTTGGAGCAGAAGGTCACGGGT 122 13 237 Antisense
Sequence Source Affymetrix Proprietary Database