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[181103_s_at]

Description E04A4.4 /REP_DB=WormBase Gene ID /WP=CE16965 /TR=O44476 /GB=AAB92042.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 81      6grp_total > 59      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 316.8
(1.7)
P 		164.8
(-3)
P 		358.4
(3)
P 		303.9
(1.3)
P 		194
B 266.7
(0.1)
P 		328.4
(3)
P 		271
(0.3)
P 		200.9
(-3)
P 		128
C 296.1
(0.1)
P 		204.4
(-3)
P 		381.1
(3)
P 		283.3
(-0.3)
P 		177
avr 293.2
(0.5) 		232.5
(-3) 		336.8
(3) 		262.7
(-1.3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 188.8
(-3)
P 		305.8
(1.8)
P 		269.5
(0.3)
P 		260.6
(-0.1)
P 		211.7
(-2.1)
P 		335
(3)
P 		146
B 236.9
(1)
P 		155.7
(-3)
P 		175.2
(-2)
P 		207.4
(-0.5)
P 		278.3
(3)
P 		221.7
(0.2)
P 		123
C 321.4
(2.3)
P 		181.3
(-2.8)
P 		176
(-3)
P 		216.7
(-1.5)
P 		235.8
(-0.8)
P 		339.2
(3)
P 		163
avr 249
(-0.2) 		214.3
(-2.5) 		206.9
(-3) 		228.2
(-1.6) 		241.9
(-0.7) 		298.6
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 115.3
(3)
P 		35.8
(-3)
P 		93.7
(1.4)
P 		44.5
(-2.3)
P 		80
B 85
(3)
P 		81.1
(2.4)
P 		62.8
(-0.2)
P 		42.8
(-3)
P 		42
C 98
(0.5)
P 		58.8
(-2.2)
P 		132.8
(3)
P 		47.8
(-3)
P 		85
avr 99.4
(3) 		58.6
(-1.5) 		96.4
(2.7) 		45
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 34.8
(-3)
P 		108.8
(3)
P 		58.7
(-1.1)
P 		66.1
(-0.5)
P 		63.9
(-0.6)
P 		81.6
(0.8)
P 		74
B 82.4
(0.4)
P 		51.8
(-2.2)
P 		42.5
(-3)
P 		54.9
(-1.9)
P 		113.1
(3)
P 		82.7
(0.4)
P 		71
C 119.1
(3)
P 		55.3
(-2.1)
P 		44.8
(-2.9)
P 		43.6
(-3)
P 		76.3
(-0.4)
P 		113.5
(2.6)
P 		76
avr 78.8
(1.1) 		72
(0.2) 		48.7
(-3) 		54.9
(-2.2) 		84.4
(1.9) 		92.6
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181103_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10942
Sequence Type Exemplar sequence
Representative Public ID E04A4.4 NCBI
Target Description E04A4.4 /REP_DB=WormBase Gene ID /WP=CE16965 /TR=O44476 /GB=AAB92042.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027938(9), NM_001027939(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027938 NCBI Caenorhabditis elegans Homolog Of ELAC2 (cancer susceptibility locus) family member (hoe-1) (hoe-1) mRNA, complete cds. 9/11 None
NM_001027939 NCBI Caenorhabditis elegans Homolog Of ELAC2 (cancer susceptibility locus) family member (hoe-1) (hoe-1) mRNA, complete cds. 9/11 None
GENEFINDER00000038156 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4739647:4744241:-1 11/11 None
E04A4.4a ENSEMBL cdna:known chromosome:CEL140:IV:4739487:4744258:-1 gene:E04A4.4 9/11 None
E04A4.4b ENSEMBL cdna:known chromosome:CEL140:IV:4739647:4744260:-1 gene:E04A4.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038151 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4739652-4743931(-) 99.96 99.96
Public Domain and Genome References
Ensembl E04A4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92042 Homolog of elac2 (cancer susceptibility locus) protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023109.1| Homolog Of ELAC2 (cancer susceptibility locus) family member (hoe-1) [Caenorhabditis elegans] sp|O44476|RNZ_CAEEL Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Homolog of ELAC2 protein 1) (CeELAC2) 0.0
blast AAT27250 Homolog of elac2 (cancer susceptibility locus) protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023110.1| Homolog Of ELAC2 (cancer susceptibility locus) family member (hoe-1) [Caenorhabditis elegans] 0.0
blast CAE58575 Hypothetical protein CBG01741 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 2.2E-18
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 2.2E-18
Sequence
Target Sequence 
>C. ELEGANS:181103_S_AT
ctcccgccgagcagagatgttctacaggatatgtcgagcagtttcgataaaaaggcatgg
aagctggatgagctgaaggctgtacaagttcatcatacaagaatggcaaatggatttgtg
atgagagttgctggaaaacgaattgtattctctggagatacgaaaccatgtgatttgttg
gttgaagaaggaaaagatgctgatgttcttgttcatgaatccacttttgaagatggtcat
gaggtagatatgacaccaaaacccccaaaaaaattggctaaaatttcgtctttggctgat
gcaatgagaaaacgtcattcaacaatgggtcaagcagtcgatgttggaaaacgaatgaat
gccaagcacattattctgacacatttcagtgcgagatatccaaaagtaccagttcttcct
gaatatcttgataaggaaaatattggtgtggcgatggatatgttgagagttcgattcgat
catttaccacttgtttcgaaacttcttcccatttttagagaagtattcgtggcggaacta
ttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCGCCGAGCAGAGATGTTCTAC 495 233 1927 Antisense
GTTCTTGTTCATGAATCCACTTTTG 607 443 2131 Antisense
GTAGATATGACACCAAAACCCCCAA 116 421 2170 Antisense
AAATTTCGTCTTTGGCTGATGCAAT 70 117 2207 Antisense
AATGGGTCAAGCAGTCGATGTTGGA 483 163 2250 Antisense
GCCAAGCACATTATTCTGACACATT 472 277 2287 Antisense
GACACATTTCAGTGCGAGATATCCA 273 367 2304 Antisense
AAGTACCAGTTCTTCCTGAATATCT 534 157 2330 Antisense
GATTCGATCATTTACCACTTGTTTC 198 433 2399 Antisense
CACTTGTTTCGAAACTTCTTCCCAT 356 197 2414 Antisense
GAAGTATTCGTGGCGGAACTATTCG 46 337 2446 Antisense
Sequence Source Affymetrix Proprietary Database