[Home] | [Total List]

[181102_at] 7TM chemoreceptor, srw family

Description C41G6.15 /REP_DB=WormBase Gene ID /WP=CE23589 /TR=Q9U3M3 /GB=CAB60284.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 01      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 6.8
(-2.8)
A 		3.1
(-3)
A 		3.9
(-3)
A 		102.1
(3)
A 		99
B 2.8
(-3)
A 		5.3
(-2.3)
A 		19.8
(1.5)
A 		25.7
(3)
A 		23
C 4.7
(-2.9)
A 		11.2
(-2.7)
A 		2
(-3)
A 		168.3
(3)
P 		166
avr 4.8
(-3) 		6.5
(-2.9) 		8.6
(-2.8) 		98.7
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 4.4
(-2.8)
A 		2.1
(-3)
A 		64.5
(3)
A 		2
(-3)
A 		3.4
(-2.9)
A 		3.1
(-2.9)
A 		63
B 5.6
(1.1)
A 		2.8
(-3)
A 		3.7
(-1.7)
A 		6.9
(3)
A 		6.5
(2.4)
A 		4.2
(-1)
A 		4
C 3
(-2.5)
A 		16.9
(3)
A 		6.9
(-1)
A 		10.3
(0.4)
A 		1.8
(-3)
A 		5.9
(-1.4)
A 		15
avr 4.3
(-2.9) 		7.3
(-2) 		25
(3) 		6.4
(-2.3) 		3.9
(-3) 		4.4
(-2.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 2.5
(-2.2)
A 		0.7
(-3)
A 		1
(-2.9)
A 		14.9
(3)
A 		14
B 0.9
(-3)
A 		1.3
(-2.5)
A 		4.6
(1.8)
A 		5.5
(3)
A 		5
C 1.5
(-2.8)
A 		3.2
(-2.5)
A 		0.7
(-3)
A 		28.4
(3)
P 		28
avr 1.6
(-3) 		1.7
(-3) 		2.1
(-2.8) 		16.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.7
(-2.9)
A 		14.1
(3)
A 		0.5
(-3)
A 		1
(-2.8)
A 		0.8
(-2.9)
A 		14
B 2
(0.7)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.8
(0)
A 		2.7
(3)
A 		1.6
(-0.7)
A 		2
C 1.1
(-2.3)
A 		5.1
(3)
A 		1.8
(-1.4)
A 		2.1
(-1)
A 		0.6
(-3)
A 		2
(-1.1)
A 		5
avr 1.3
(-3) 		2.2
(-1.7) 		5.6
(3) 		1.5
(-2.7) 		1.4
(-2.9) 		1.5
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13629
Sequence Type Exemplar sequence
Representative Public ID C41G6.15 NCBI
Target Description C41G6.15 /REP_DB=WormBase Gene ID /WP=CE23589 /TR=Q9U3M3 /GB=CAB60284.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074366 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-13) (srw-13) mRNA, complete cds. 11/11 None
SNAP00000010441 ENSEMBL cdna:SNAP chromosome:CEL140:V:15235086:15236430:1 11/11 None
GENEFINDER00000010450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15235086:15236430:1 11/11 None
C41G6.15 ENSEMBL cdna:known chromosome:CEL140:V:15235086:15236430:1 gene:C41G6.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15235085-15236430(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-13
Ensembl C41G6.15
Entrez Gene 183390 Entrez gene
SwissProt Q9U3M3 EMBL-EBI
WormBase CE23589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60284 Hypothetical protein C41G6.15 [Caenorhabditis elegans] ref|NP_506767.1| Serpentine Receptor, class W family member (srw-13) [Caenorhabditis elegans] 0.0
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 1.0E-122
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 1.0E-119
blast CAB02833 Hypothetical protein C41G6.8 [Caenorhabditis elegans] ref|NP_506764.2| Serpentine Receptor, class W family member (srw-14) [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506767.1 7 37-56,63-85,131-150,163-185,228-250,276-298,318-340
C41G6.15 7 37-56,63-85,131-150,163-185,228-250,276-298,318-340
SNAP00000010441 7 37-56,63-85,131-150,163-185,228-250,276-298,318-340
GENEFINDER00000010450 7 20-38,45-67,113-132,145-167,210-232,258-280,300-322
Sequence
Target Sequence 
>C. ELEGANS:181102_AT
gcgcgacgttttggacattgtattccacgtggaagtttacattttatagagtattttggt
tgccagataatgcagtcgagagctgtaaactctatggaccacaattcataactccagagt
acgtcctagcagctcctgtgaaaatggacagaatgatgattgattggagaattgttgagt
tttttgtgaatgtctcctctgcagttatttatccacttcttactgtttctttgttgatag
ccctacgccagatcaagaaaagaaggcaaaatcttcaaagaaaagaaaatgagccagctg
ataatacaaccaaattgatattattcatgacaatcatttttacgttctcagaagggttga
gtggtttcagtgcatttttcatttatcatattgagacgatagctatacattatcctgatc
tcataagcacagcagtcgccttggagtttcctattgcagtccttagaacgtttaatgcat
tttcacactttttcgtttgctttctcctatcatctcaatatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCGACGTTTTGGACATTGTATTC 10 289 524 Antisense
ATAACTCCAGAGTACGTCCTAGCAG 98 25 631 Antisense
ACGTCCTAGCAGCTCCTGTGAAAAT 329 95 644 Antisense
AGTTTTTTGTGAATGTCTCCTCTGC 270 63 701 Antisense
TGTCTCCTCTGCAGTTATTTATCCA 124 559 714 Antisense
TATCCACTTCTTACTGTTTCTTTGT 388 657 733 Antisense
TGTTTCTTTGTTGATAGCCCTACGC 536 561 747 Antisense
GAGTGGTTTCAGTGCATTTTTCATT 631 401 882 Antisense
GATCTCATAAGCACAGCAGTCGCCT 594 419 940 Antisense
AGTCGCCTTGGAGTTTCCTATTGCA 364 61 957 Antisense
CTTTCTCCTATCATCTCAATATCGA 343 223 1023 Antisense
Sequence Source Affymetrix Proprietary Database