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[181100_at]

Description F41H8.2 /REP_DB=WormBase Gene ID /WP=CE19869 /TR=Q9UAQ0 /GB=AAC69212.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.2
(-3)
A 		7.8
(1.2)
A 		4.1
(-2.2)
A 		9.8
(3)
A 		7
B 7.5
(3)
A 		5.2
(0.4)
A 		2.2
(-3)
A 		3.6
(-1.4)
A 		5
C 7.7
(-0.8)
A 		3.4
(-2.9)
A 		3.2
(-3)
A 		15.7
(3)
A 		13
avr 6.1
(-0.3) 		5.5
(-0.9) 		3.2
(-3) 		9.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.6
(3)
A 		8.3
(1)
A 		6.2
(-0.8)
A 		6
(-0.9)
A 		3.6
(-3)
A 		8.6
(1.3)
A 		7
B 3.6
(-1.4)
A 		3.5
(-1.6)
A 		5.8
(3)
A 		3.6
(-1.4)
A 		2.8
(-3)
A 		3.3
(-2)
A 		3
C 20.2
(3)
A 		7.5
(-1.4)
A 		3.9
(-2.7)
A 		7
(-1.6)
A 		4.7
(-2.4)
A 		3
(-3)
A 		17
avr 11.5
(3) 		6.4
(-0.9) 		5.3
(-1.8) 		5.5
(-1.6) 		3.7
(-3) 		5
(-2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(-2)
A 		1.7
(3)
A 		1.1
(-3)
A 		1.4
(-0)
A 		1
B 2.4
(3)
A 		1.3
(-0.5)
A 		0.5
(-3)
A 		0.8
(-2.1)
A 		2
C 2.6
(3)
A 		1
(-3)
A 		1.1
(-2.6)
A 		2.6
(3)
A 		2
avr 2.1
(3) 		1.3
(-1) 		0.9
(-3) 		1.6
(0.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2
(0)
A 		2.9
(3)
A 		1.3
(-2.3)
A 		1.5
(-1.7)
A 		1.1
(-3)
A 		2.1
(0.3)
A 		2
B 1.2
(0)
A 		1.2
(0)
A 		1.4
(3)
A 		1
(-3)
A 		1.1
(-1.5)
A 		1.2
(0)
A 		0
C 7.5
(3)
A 		2.3
(-1.8)
A 		1
(-3)
A 		1.4
(-2.6)
A 		1.5
(-2.5)
A 		1
(-3)
A 		7
avr 3.6
(3) 		2.1
(-0.8) 		1.2
(-3) 		1.3
(-2.8) 		1.2
(-3) 		1.4
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15443
Sequence Type Exemplar sequence
Representative Public ID F41H8.2 NCBI
Target Description F41H8.2 /REP_DB=WormBase Gene ID /WP=CE19869 /TR=Q9UAQ0 /GB=AAC69212.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070934(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070934 NCBI Caenorhabditis elegans F41H8.2 (F41H8.2) mRNA, complete cds. 10/11 None
GENEFINDER00000012425 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:826241:828591:1 10/11 None
F41H8.2 ENSEMBL cdna:known chromosome:CEL140:V:826241:828591:1 gene:F41H8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:826240-828591(+) 81.27 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H8.2
Entrez Gene 185639 Entrez gene
SwissProt Q9UAQ0 EMBL-EBI
WormBase CE35306 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69212 Hypothetical protein F41H8.2 [Caenorhabditis elegans] ref|NP_503335.2| F41H8.2 [Caenorhabditis elegans] 1.0E-165
blast AAC69212 Hypothetical protein F41H8.2 [Caenorhabditis elegans] ref|NP_503335.2| F41H8.2 [Caenorhabditis elegans] 1.0E-145
blast NP_503332 R13D11.1 [Caenorhabditis elegans] gb|AAB69943.1| Hypothetical protein R13D11.1 [Caenorhabditis elegans] 1.0E-125
blast NP_503331 R13D11.3 [Caenorhabditis elegans] gb|AAK82916.1| Hypothetical protein R13D11.3 [Caenorhabditis elegans] 1.0E-118
blast NP_503332 R13D11.1 [Caenorhabditis elegans] gb|AAB69943.1| Hypothetical protein R13D11.1 [Caenorhabditis elegans] 1.0E-109
blast NP_503331 R13D11.3 [Caenorhabditis elegans] gb|AAK82916.1| Hypothetical protein R13D11.3 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503335.2 7 19-41,53-75,104-126,131-153,178-200,230-252,262-284
F41H8.2 7 19-41,53-75,104-126,131-153,178-200,230-252,262-284
GENEFINDER00000012425 6 73-95,122-144,149-171,196-218,248-270,280-302
Sequence
Target Sequence 
>C. ELEGANS:181100_AT
aaaaaacgcgctattctttccatcaatttttcgaagaatggatctcgggtattattcgaa
ttgtgttattcttatagccgttctttgtgcaattttcgacgattttttgtactggcatac
tactactattgagcaccatataaactgcggaactattgggtgtttcgtgagcgatcaatt
tcgttattactggggaatttctaatatggtcctgggattcatggctgtggtgttatcaat
tacaatattttggaaactaaaagtagtttcaaaaaataagtcctcagtggctagcgctgc
cggttcaacatctaacaagtacgctaaagctaaccgtacctcaactggaatcctaatgtc
ctcattattattcataacgcttccaagtgtttgcgtgggcgttgtagagctttcaggctt
ttcaattttcaaattaatcggaccattttactccgcatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAACGCGCTATTCTTTCCATCA 492 127 699 Antisense
GTTATTCTTATAGCCGTTCTTTGTG 288 447 763 Antisense
GGCATACTACTACTATTGAGCACCA 377 535 812 Antisense
ACTATTGGGTGTTTCGTGAGCGATC 656 101 850 Antisense
GTCCTGGGATTCATGGCTGTGGTGT 201 477 907 Antisense
AAATAAGTCCTCAGTGGCTAGCGCT 72 115 972 Antisense
GCTGCCGGTTCAACATCTAACAAGT 347 297 994 Antisense
GCTAACCGTACCTCAACTGGAATCC 640 301 1027 Antisense
AACTGGAATCCTAATGTCCTCATTA 47 143 1041 Antisense
GTGGGCGTTGTAGAGCTTTCAGGCT 90 489 1093 Antisense
ATCGGACCATTTTACTCCGCATGTC 599 33 1135 Antisense
Sequence Source Affymetrix Proprietary Database