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[181099_at]

Description F54C1.1 /REP_DB=WormBase Gene ID /WP=CE11042 /TR=P91326 /GB=AAK21391.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 95.1
(-0.1)
M 		98.1
(0.2)
A 		122
(3)
A 		70.1
(-3)
A 		52
B 72.8
(-3)
A 		86
(0.5)
M 		95.6
(3)
A 		81.1
(-0.8)
A 		23
C 120
(3)
A 		107.3
(-0.5)
M 		98.1
(-3)
P 		105.8
(-0.9)
A 		22
avr 96
(0.2) 		97.1
(0.5) 		105.2
(3) 		85.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 43.3
(-3)
A 		72.8
(0.9)
A 		61.4
(-0.6)
A 		88.5
(3)
A 		71
(0.7)
A 		48.6
(-2.3)
A 		45
B 89.6
(3)
P 		87.4
(2.7)
M 		42.3
(-2.9)
A 		49
(-2)
A 		59
(-0.8)
A 		41.1
(-3)
A 		49
C 53.2
(-1.8)
A 		95.6
(3)
A 		43.1
(-2.9)
A 		66.6
(-0.3)
A 		50.1
(-2.2)
A 		42.6
(-3)
A 		53
avr 62
(-0.4) 		85.3
(3) 		48.9
(-2.3) 		68
(0.5) 		60
(-0.7) 		44.1
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 34.6
(3)
M 		21.3
(-0.3)
A 		31.9
(2.3)
A 		10.3
(-3)
A 		24
B 23.2
(3)
A 		21.3
(1.1)
M 		22.1
(1.9)
A 		17.3
(-3)
A 		6
C 39.7
(3)
A 		30.8
(0.6)
M 		34.2
(1.5)
P 		17.8
(-3)
A 		22
avr 32.5
(3) 		24.5
(0.2) 		29.4
(1.9) 		15.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8
(-3)
A 		25.9
(3)
A 		13.4
(-1.2)
A 		22.4
(1.8)
A 		21.4
(1.5)
A 		11.8
(-1.7)
A 		18
B 31.2
(3)
P 		29.1
(2.4)
M 		10.3
(-3)
A 		13
(-2.2)
A 		24
(0.9)
A 		15.3
(-1.6)
A 		21
C 19.7
(-0.1)
A 		29.2
(3)
A 		11
(-3)
A 		13.4
(-2.2)
A 		16.2
(-1.3)
A 		14.3
(-1.9)
A 		18
avr 19.6
(-0.1) 		28.1
(3) 		11.6
(-3) 		16.3
(-1.3) 		20.5
(0.2) 		13.8
(-2.2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.882
Sequence Type Exemplar sequence
Representative Public ID F54C1.1 NCBI
Target Description F54C1.1 /REP_DB=WormBase Gene ID /WP=CE11042 /TR=P91326 /GB=AAK21391.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059098 NCBI Caenorhabditis elegans F54C1.1 (F54C1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015282 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5008793:5013374:1 11/11 None
SNAP00000015273 ENSEMBL cdna:SNAP chromosome:CEL140:I:5010553:5013374:1 11/11 None
F54C1.1 ENSEMBL cdna:known chromosome:CEL140:I:5008789:5013374:1 gene:F54C1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5008792-5013374(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54C1.1
Entrez Gene 172126 Entrez gene
SwissProt P91326 EMBL-EBI
WormBase CE11042 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21391 Hypothetical protein F54C1.1 [Caenorhabditis elegans] ref|NP_491499.1| F54C1.1 [Caenorhabditis elegans] 0.0
blast CAE65694 Hypothetical protein CBG10769 [Caenorhabditis briggsae] 0.0
blast CAF91810 unnamed protein product [Tetraodon nigroviridis] 2.0E-19
blast NP_891975 egt [Cryptophlebia leucotreta granulovirus] gb|AAQ21723.1| egt [Cryptophlebia leucotreta granulovirus] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.9E-7
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.9E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491499.1 1 563-580
F54C1.1 1 563-580
GENEFINDER00000015282 1 563-580
SNAP00000015273 1 418-435
Sequence
Target Sequence 
>C. ELEGANS:181099_AT
aattcatttcgaacttctccgatctcttctggagacttttgcaaaacaacccggacttat
tatctggcaatcaaatttaaatgctcaagaaattaaagaaattcacaatttaacagttcc
ggaaaatgttatggtgagctcatgggtgccaataaaagaactattggctcatgataacat
tgaatttctaatttgtcatggaggtatcaatactgtcaatgaacttggattatttggagt
tccggttcttggagtaccattacaaggagaccaagcttcgaatttagcgcgagttgttga
tttgggagcagctgaattgatgacaattattgacttgaatgatggaaaattggatgagat
gatggacaaaatgaggcggaatttatctagatactggacaagaagtgaaaagctatcaaa
aatgctttcccaacttcgttcattccacaccggataccaacagttctggcttaattgggt
tgctagacacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCATTTCGAACTTCTCCGATCT 222 177 1149 Antisense
TCCGATCTCTTCTGGAGACTTTTGC 319 595 1166 Antisense
AACCCGGACTTATTATCTGGCAATC 170 147 1196 Antisense
GTTATGGTGAGCTCATGGGTGCCAA 602 445 1276 Antisense
GAGTTCCGGTTCTTGGAGTACCATT 560 369 1385 Antisense
GACCAAGCTTCGAATTTAGCGCGAG 248 383 1417 Antisense
TTAGCGCGAGTTGTTGATTTGGGAG 451 681 1432 Antisense
TCAAAAATGCTTTCCCAACTTCGTT 515 627 1564 Antisense
TTCATTCCACACCGGATACCAACAG 67 685 1587 Antisense
GGATACCAACAGTTCTGGCTTAATT 177 511 1600 Antisense
GGCTTAATTGGGTTGCTAGACACGG 580 535 1616 Antisense
Sequence Source Affymetrix Proprietary Database