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[181098_at]

Description ZK563.6 /REP_DB=WormBase Gene ID /WP=CE28192 /TR=Q23534 /GB=AAA81152.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_high_8_8 > 49      6grp_highest_nonorm > 61      6grp_total > 32      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 461.9
(3)
P 		360.9
(0.7)
P 		348.6
(0.4)
P 		202.7
(-3)
M 		259
B 486.2
(3)
P 		373.9
(0.9)
P 		363.6
(0.7)
P 		160.8
(-3)
A 		325
C 477.3
(3)
P 		394.2
(0.8)
P 		374.2
(0.3)
P 		247.5
(-3)
P 		230
avr 475.1
(3) 		376.3
(0.8) 		362.1
(0.5) 		203.7
(-3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 517.9
(3)
P 		459.8
(1.6)
P 		441.4
(1.2)
P 		414.9
(0.6)
P 		404
(0.3)
P 		265.1
(-3)
P 		253
B 481.4
(3)
P 		458.1
(2.3)
P 		459.2
(2.4)
P 		356.4
(-0.5)
P 		321.5
(-1.5)
P 		266.6
(-3)
P 		215
C 396.9
(-0.1)
P 		496.6
(1.5)
P 		588.6
(3)
P 		469.8
(1.1)
P 		299.9
(-1.6)
P 		215.7
(-3)
P 		373
avr 465.4
(2.2) 		471.5
(2.4) 		496.4
(3) 		413.7
(1) 		341.8
(-0.8) 		249.1
(-3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 168.2
(3)
P 		78.3
(-0.9)
P 		91.1
(-0.3)
P 		29.7
(-3)
M 		139
B 155.1
(3)
P 		92.4
(-0.1)
P 		84.3
(-0.5)
P 		34.3
(-3)
A 		121
C 158
(3)
P 		113.3
(0.7)
P 		130.4
(1.6)
P 		41.7
(-3)
P 		116
avr 160.4
(3) 		94.7
(-0.1) 		101.9
(0.2) 		35.2
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 95.5
(-1.1)
P 		163.5
(3)
P 		96.1
(-1.1)
P 		105.2
(-0.5)
P 		121.9
(0.5)
P 		64.6
(-3)
P 		99
B 167.5
(3)
P 		152.5
(1.8)
P 		111.5
(-1.6)
P 		94.4
(-3)
P 		130.6
(-0)
P 		99.4
(-2.6)
P 		73
C 147.1
(2.7)
P 		151.5
(3)
P 		149.8
(2.9)
P 		94.5
(-1.3)
P 		97
(-1.1)
P 		72.2
(-3)
P 		79
avr 136.7
(1.5) 		155.8
(3) 		119.1
(0.1) 		98
(-1.5) 		116.5
(-0.1) 		78.7
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18114
Sequence Type Exemplar sequence
Representative Public ID ZK563.6 NCBI
Target Description ZK563.6 /REP_DB=WormBase Gene ID /WP=CE28192 /TR=Q23534 /GB=AAA81152.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076184 NCBI Caenorhabditis elegans ZK563.6 (ZK563.6) mRNA, complete cds. 11/11 None
SNAP00000043686 ENSEMBL cdna:SNAP chromosome:CEL140:X:3382950:3385448:-1 11/11 None
ZK563.6 ENSEMBL cdna:known chromosome:CEL140:X:3382873:3385449:-1 gene:ZK563.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043690 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3382950-3384519(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK563.6
Entrez Gene 180627 Entrez gene
SwissProt Q23534 EMBL-EBI
WormBase CE28192 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81152 Hypothetical protein ZK563.6 [Caenorhabditis elegans] ref|NP_508585.1| ZK563.6 [Caenorhabditis elegans] 0.0
blast CAE68420 Hypothetical protein CBG14199 [Caenorhabditis briggsae] 1.0E-177
blast CAA91407 Hypothetical protein F14E5.4 [Caenorhabditis elegans] ref|NP_495774.1| F14E5.4 [Caenorhabditis elegans] 4.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 7.7E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508585.1 2 5-27,387-409
ZK563.6 2 5-27,387-409
SNAP00000043686 2 5-27,387-409
Sequence
Target Sequence 
>C. ELEGANS:181098_AT
gcagttatgtcttcagtcggtgaatacaaaagctccaaaggaatccgaattaaatctgga
cttttgatggagaaagtgttcaatgacattcaagaaaaagtgcgctgtcatgagaaaaag
gaagtttcaaatattaaatgcgacattcacaagctacaagttttcagttctcacgactta
ctaattcttccaattctggaaactcttggaattcgtgaagaagttttgggaaaagacatg
ccaccagagttcatgtcaacaataattattgaaacaatgatagttgacaattctccagtg
gtaaaagtgcttttccgaaaaaaccctcgagaaattacattacgcgatgtcaccggattt
gtcaaaaattgccctcccggccagccgctttgcccagttcagcgatttacttcttgttgt
aacgagtttatcacctcggatccaaaatcagaatgttatgcagaaacaacagttgaaaaa
caaagtgaatgggtaatgaccccactttcatggataattgttgcaattgcgatacttctt
ttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTATGTCTTCAGTCGGTGAAT 418 311 559 Antisense
AATGCGACATTCACAAGCTACAAGT 526 165 695 Antisense
GTTCTCACGACTTACTAATTCTTCC 107 443 725 Antisense
ATGCCACCAGAGTTCATGTCAACAA 415 41 796 Antisense
GATAGTTGACAATTCTCCAGTGGTA 249 425 837 Antisense
ATTACGCGATGTCACCGGATTTGTC 142 13 897 Antisense
GGATTTGTCAAAAATTGCCCTCCCG 44 509 913 Antisense
GCTTTGCCCAGTTCAGCGATTTACT 598 303 945 Antisense
GAGTTTATCACCTCGGATCCAAAAT 663 397 982 Antisense
GGTAATGACCCCACTTTCATGGATA 470 493 1050 Antisense
GTTGCAATTGCGATACTTCTTTTAA 382 437 1078 Antisense
Sequence Source Affymetrix Proprietary Database