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[181097_at]

Description T21H3.1 /REP_DB=WormBase Gene ID /WP=CE13898 /TR=O16308 /GB=AAB65367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 24      4grp_high_8_8 > 59      6grp_highest_nonorm > 18      6grp_total > 42      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17182
1 2 3 4 range
A 16795.6
(2.7)
P 		17589.9
(3)
P 		17261.9
(2.9)
P 		1139.6
(-3)
P 		16450
B 16071.2
(2.2)
P 		16735.3
(2.5)
P 		18275.1
(3)
P 		1111.9
(-3)
P 		17163
C 15094.2
(2.8)
P 		14653.4
(2.6)
P 		15611.8
(3)
P 		1092.8
(-3)
P 		14519
avr 15987
(2.6) 		16326.2
(2.7) 		17049.6
(3) 		1114.8
(-3) 		15935

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7795
1 2 3 4 5 6 range
A 16193.1
(1.1)
P 		14407.6
(-0.8)
P 		17951.9
(3)
P 		15103.5
(-0.1)
P 		12734.3
(-2.6)
P 		12376.7
(-3)
P 		5575
B 15356.4
(0.2)
P 		15099.1
(-0)
P 		18823.6
(3)
P 		14369.2
(-0.6)
P 		12780.7
(-1.9)
P 		11400.6
(-3)
P 		7423
C 14135.9
(-0.1)
P 		14136.2
(-0.1)
P 		17542.7
(3)
P 		15443
(1.1)
P 		14285.6
(0)
P 		11028.5
(-3)
P 		6514
avr 15228.5
(0.3) 		14547.6
(-0.3) 		18106.1
(3) 		14971.9
(0.1) 		13266.9
(-1.5) 		11601.9
(-3) 		6504
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5949
1 2 3 4 range
A 6115.3
(3)
P 		3818.3
(0.7)
P 		4512.6
(1.4)
P 		166.8
(-3)
P 		5949
B 5125
(3)
P 		4133.2
(1.8)
P 		4234.8
(1.9)
P 		236.9
(-3)
P 		4888
C 4996.6
(2.5)
P 		4212.9
(1.6)
P 		5441.2
(3)
P 		184.3
(-3)
P 		5257
avr 5412.3
(3) 		4054.8
(1.4) 		4729.5
(2.2) 		196
(-3) 		5216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2358
1 2 3 4 5 6 range
A 2985.1
(-3)
P 		5124
(3)
P 		3909.6
(-0.4)
P 		3830.6
(-0.6)
P 		3842.7
(-0.6)
P 		3013.3
(-2.9)
P 		2139
B 5343.3
(3)
P 		5025.8
(1.8)
P 		4570.9
(-0)
P 		3805.9
(-3)
P 		5192.6
(2.4)
P 		4251.2
(-1.3)
P 		1537
C 5239.6
(3)
P 		4313.4
(0.4)
P 		4464.9
(0.8)
P 		3105.6
(-3)
P 		4622.6
(1.3)
P 		3691.9
(-1.4)
P 		2134
avr 4522.7
(1.6) 		4821.1
(3) 		4315.1
(0.6) 		3580.7
(-3) 		4552.6
(1.7) 		3652.1
(-2.7) 		1240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15963
Sequence Type Exemplar sequence
Representative Public ID T21H3.1 NCBI
Target Description T21H3.1 /REP_DB=WormBase Gene ID /WP=CE13898 /TR=O16308 /GB=AAB65367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028981 NCBI Caenorhabditis elegans T21H3.1a (T21H3.1) mRNA, complete cds. 11/11 None
T21H3.1 ENSEMBL cdna:known chromosome:CEL140:V:1176554:1178664:1 gene:T21H3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028982 6/11 Cross Hyb Matching Probes None
SNAP00000016912 4/11 Cross Hyb Matching Probes None
SNAP00000022433 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178615 2 1 NM_001028981 181097_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1176554-1178655(+) 100.0 100.0
Public Domain and Genome References
Ensembl T21H3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65367 Hypothetical protein T21H3.1a [Caenorhabditis elegans] ref|NP_001024152.1| T21H3.1a [Caenorhabditis elegans] 1.0E-161
blast CAE58023 Hypothetical protein CBG01095 [Caenorhabditis briggsae] 1.0E-144
blast AAX88813 Hypothetical protein T21H3.1b [Caenorhabditis elegans] ref|NP_001024153.1| T21H3.1b [Caenorhabditis elegans] 9.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.3E-57
Sequence
Target Sequence 
>C. ELEGANS:181097_AT
gagactgtcttcgagtatcacactccatgggctgctggaggtgtcgtctcccagtacttc
aacgacggatttttgaacatctggaacgccggactcaaggacgattttaacactcttgcc
gcccaaaacccaggattccaagtttgggtcaccggacactccctcggaggagcgatggcc
tcccttgccgcctcctacatcacctacaacaagctcttcgacgcctcgaagcttcaactc
gtcacctacggacagccacgtgtcggagacaaggcctacgcggccgccgtcgatcgtgac
gtcacgaacaagttccgcgtcacccacgcccacgacccggtgccacatcttccaaaggag
aacatgcaaggattcacccaccacaaggccgaggtgttctacaaggagaaaatgacgaag
tacaacatttgcgatgatatcgatgagagcgaattctgctccaacggacaagttcttcca
gacacttctatcaaggatcatcttcactacttcgacgttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTGTCTTCGAGTATCACACTC 633 393 364 Antisense
GTCTCCCAGTACTTCAACGACGGAT 416 469 409 Antisense
GGAACGCCGGACTCAAGGACGATTT 129 529 446 Antisense
AGGACGATTTTAACACTCTTGCCGC 45 55 461 Antisense
GACACTCCCTCGGAGGAGCGATGGC 179 367 518 Antisense
CAAGCTCTTCGACGCCTCGAAGCTT 88 185 573 Antisense
CTACGGACAGCCACGTGTCGGAGAC 614 225 609 Antisense
AGAACATGCAAGGATTCACCCACCA 327 73 722 Antisense
GCGAATTCTGCTCCAACGGACAAGT 195 289 812 Antisense
AGTTCTTCCAGACACTTCTATCAAG 278 63 834 Antisense
TCATCTTCACTACTTCGACGTTGAT 104 621 861 Antisense
Sequence Source Affymetrix Proprietary Database