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[181095_at]

Description B0524.1 /REP_DB=WormBase Gene ID /WP=CE20463 /TR=Q9N5Z5 /GB=AAF39748.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2.5
(-3)
A 		46.5
(3)
A 		8.2
(-2.2)
A 		5.1
(-2.6)
A 		44
B 20.2
(0.6)
A 		26.5
(3)
A 		17.9
(-0.3)
A 		10.7
(-3)
A 		16
C 10.5
(-2.7)
A 		14
(-1.8)
A 		32.5
(3)
A 		9.4
(-3)
A 		23
avr 11.1
(-2.2) 		29
(3) 		19.5
(0.2) 		8.4
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 6.8
(-2.5)
A 		3.8
(-3)
A 		34.9
(2.5)
A 		3.9
(-3)
A 		38
(3)
A 		29.3
(1.5)
A 		34
B 18.4
(-0.1)
A 		36.5
(3)
A 		9.5
(-1.6)
A 		1.4
(-3)
A 		10.9
(-1.4)
A 		2.3
(-2.8)
A 		35
C 43.2
(3)
A 		13
(-1.6)
A 		3.4
(-3)
A 		4.6
(-2.8)
A 		16
(-1.1)
A 		8.1
(-2.3)
A 		40
avr 22.8
(3) 		17.8
(1.5) 		15.9
(0.9) 		3.3
(-3) 		21.6
(2.6) 		13.2
(0) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-2.9)
A 		10.1
(3)
A 		2.1
(-2.2)
A 		0.8
(-3)
A 		9
B 6.4
(2.9)
A 		6.5
(3)
A 		4.1
(-0.4)
A 		2.3
(-3)
A 		4
C 3.5
(-1.8)
A 		4
(-1.5)
A 		11.3
(3)
A 		1.6
(-3)
A 		10
avr 3.6
(-0.7) 		6.9
(3) 		5.8
(1.8) 		1.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		1.3
(-2.8)
A 		7.6
(0.8)
A 		1
(-3)
A 		11.5
(3)
A 		7.1
(0.5)
A 		11
B 6.4
(0.1)
A 		12.1
(3)
A 		2.3
(-2)
A 		0.4
(-3)
A 		4.4
(-0.9)
A 		0.9
(-2.7)
A 		12
C 16
(3)
A 		4
(-1.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		5.2
(-1.3)
A 		2.7
(-2.3)
A 		15
avr 7.9
(3) 		5.8
(1.2) 		3.6
(-0.6) 		0.8
(-3) 		7
(2.2) 		3.6
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8233
Sequence Type Exemplar sequence
Representative Public ID B0524.1 NCBI
Target Description B0524.1 /REP_DB=WormBase Gene ID /WP=CE20463 /TR=Q9N5Z5 /GB=AAF39748.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065075 NCBI Caenorhabditis elegans B0524.1 (B0524.1) mRNA, complete cds. 11/11 None
GENEFINDER00000041793 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1905956:1917293:1 10/11 None
B0524.1 ENSEMBL cdna:known chromosome:CEL140:III:1905956:1917217:1 gene:B0524.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041791 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1905955-1917217(+) 98.87 100.0
Public Domain and Genome References
Gene Title
Ensembl B0524.1
Entrez Gene 182023 Entrez gene
SwissProt Q9N5Z5 EMBL-EBI
WormBase CE20463 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39748 Hypothetical protein B0524.1 [Caenorhabditis elegans] ref|NP_497476.1| B0524.1 [Caenorhabditis elegans] 0.0
blast CAE66468 Hypothetical protein CBG11745 [Caenorhabditis briggsae] 4.0E-97
Sequence
Target Sequence 
>C. ELEGANS:181095_AT
aaagcggcgtgctgaaaatcaacggaaatcatgtgattaaccacgacgtcgtcgtgaaaa
agtggaaagttgagctgaaaattgaaggaaatggcgaaagtccgagaaaagttgtgagaa
aggcgaaggaaacgtctggttattgggattttcgatggaatttcacgaaatttgcatgga
aatctgatgttttgaagagaaaacagagatttggtcttaaattggctgaaaatgtgacta
aataccgtatttctgctaaaaatttgacaatagagcacatttaccactcggagatgcccg
agaagcactcagctcgtcgagctatcgcttttggcgtcaaaatcgaagaaatccactcgg
aaactgagttcgagaaacttctaagcgaatacgtcgagtacgaagagtcggacattcaga
atcaagtatcgattgatcgaaaaatcgatataatcacgaaaatcaagacgatcacactga
atgatgtacgggcgaaggcgatcgaaatgcagaaacaaattgtggagaaggcggtggatt
tgatggttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGGCGTGCTGAAAATCAACGG 687 119 2711 Antisense
ATGTGATTAACCACGACGTCGTCGT 482 33 2741 Antisense
ACGTCTGGTTATTGGGATTTTCGAT 192 95 2842 Antisense
CACATTTACCACTCGGAGATGCCCG 378 195 2986 Antisense
CGGAGATGCCCGAGAAGCACTCAGC 214 243 2999 Antisense
AGCACTCAGCTCGTCGAGCTATCGC 150 77 3014 Antisense
TCGAGCTATCGCTTTTGGCGTCAAA 328 603 3027 Antisense
GAGAAACTTCTAAGCGAATACGTCG 674 389 3082 Antisense
GAAGAGTCGGACATTCAGAATCAAG 92 339 3112 Antisense
GATGTACGGGCGAAGGCGATCGAAA 98 405 3193 Antisense
GAAGGCGGTGGATTTGATGGTTTTT 91 333 3237 Antisense
Sequence Source Affymetrix Proprietary Database