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[181094_at]

Description C05C8.8 /REP_DB=WormBase Gene ID /WP=CE07926 /TR=O16316 /GB=AAB65375.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 7.8
(-2.6)
A 		6
(-2.8)
A 		3.1
(-3)
A 		80.1
(3)
P 		77
B 8.9
(-3)
A 		27
(0.3)
A 		11.8
(-2.5)
A 		42
(3)
A 		33
C 8.6
(-2.6)
A 		17.2
(-2)
A 		1.3
(-3)
A 		99.2
(3)
P 		98
avr 8.4
(-2.7) 		16.7
(-2) 		5.4
(-3) 		73.8
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 5.9
(-3)
A 		5.1
(-3)
A 		47.1
(-1.7)
A 		205.4
(3)
P 		81
(-0.7)
P 		35.5
(-2.1)
A 		200
B 17.2
(-3)
A 		57.6
(-1.2)
A 		17.1
(-3)
A 		112.3
(1.1)
P 		155.6
(3)
P 		21.9
(-2.8)
A 		139
C 5.4
(-2.9)
A 		5
(-2.9)
A 		2.7
(-3)
A 		139.5
(3)
P 		121.4
(2.2)
P 		3.3
(-3)
A 		137
avr 9.5
(-3) 		22.6
(-2.4) 		22.3
(-2.5) 		152.4
(3) 		119.3
(1.6) 		20.2
(-2.6) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.9
(-1.8)
A 		1.3
(-2.7)
A 		0.8
(-3)
A 		11.7
(3)
P 		11
B 2.8
(-2.9)
A 		6.7
(0.8)
A 		2.7
(-3)
A 		9
(3)
A 		6
C 2.9
(-2.1)
A 		4.9
(-1.4)
A 		0.5
(-3)
A 		16.7
(3)
P 		16
avr 2.9
(-2.1) 		4.3
(-1.4) 		1.3
(-3) 		12.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.8
(-2.9)
A 		10.2
(-1.9)
A 		52.1
(3)
P 		24.4
(-0.3)
P 		8.6
(-2.1)
A 		51
B 6
(-2.8)
A 		19.2
(-1.5)
A 		4.2
(-3)
A 		29.7
(-0.4)
P 		63.2
(3)
P 		8.2
(-2.6)
A 		59
C 2
(-2.8)
A 		1.5
(-2.9)
A 		0.7
(-3)
A 		28.1
(1.3)
P 		39.3
(3)
P 		1.1
(-2.9)
A 		39
avr 3
(-3) 		7.5
(-2.3) 		5
(-2.7) 		36.6
(2.1) 		42.3
(3) 		6
(-2.5) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12030
Sequence Type Exemplar sequence
Representative Public ID C05C8.8 NCBI
Target Description C05C8.8 /REP_DB=WormBase Gene ID /WP=CE07926 /TR=O16316 /GB=AAB65375.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072443 NCBI Caenorhabditis elegans C05C8.8 (C05C8.8) mRNA, complete cds. 11/11 None
C05C8.8 ENSEMBL cdna:known chromosome:CEL140:V:7254918:7257750:-1 gene:C05C8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024629 4/11 Cross Hyb Matching Probes None
GENEFINDER00000024633 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7254918-7257751(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C8.8
Entrez Gene 182247 Entrez gene
SwissProt O16316 EMBL-EBI
WormBase CE07926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65375 Hypothetical protein C05C8.8 [Caenorhabditis elegans] ref|NP_504844.1| C05C8.8 [Caenorhabditis elegans] 0.0
blast NP_503533 T06A1.1 [Caenorhabditis elegans] gb|AAC17772.1| Hypothetical protein T06A1.1 [Caenorhabditis elegans] 1.0E-119
blast CAE58528 Hypothetical protein CBG01683 [Caenorhabditis briggsae] 9.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 7.2E-44
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.2E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504844.1 1 13-35
C05C8.8 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:181094_AT
gccaattcatgagctgtctgtttgtgttggcccattgtacggaaaaaagagcaaatggtt
ggaaattgtagaatatgtggagcattataaacttgtggattgccaccatcgaagccgaca
tcattcaaaatgggtgattaacgttgatattgacgaacgaataatttacacaggctccaa
cgatatactttattttttgaggcaagacttttcaaatctgagcaaagccattacggcaaa
tcgtattctaacaaccggaacaattccggaaaaactgaaaaattttgcaaatttacagtc
agaattgacgtttctcaagtataacaagaccacagaagtcagctggtacaatttcaaagg
aattatacgcccggatttagtatatgttttgttttatcactggtcttttcgacaaaagcc
gaatgttcatgttatttcgatacctaaacaaattattcatttaaggcattatcgaagtgt
tgatcaaaattcgttaaatggaaattggatggaattctacaatggatccttgaaagaaac
taggctggctccagatttcgaacaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAATTCATGAGCTGTCTGTTTGT 614 277 552 Antisense
GTCTGTTTGTGTTGGCCCATTGTAC 324 471 567 Antisense
TAAACTTGTGGATTGCCACCATCGA 245 639 639 Antisense
CCACCATCGAAGCCGACATCATTCA 658 273 654 Antisense
ACACAGGCTCCAACGATATACTTTA 446 109 719 Antisense
GAGGCAAGACTTTTCAAATCTGAGC 483 405 750 Antisense
AAATCTGAGCAAAGCCATTACGGCA 710 117 765 Antisense
GGCAAATCGTATTCTAACAACCGGA 23 533 786 Antisense
TTGTTTTATCACTGGTCTTTTCGAC 598 705 940 Antisense
GAAAGAAACTAGGCTGGCTCCAGAT 122 361 1083 Antisense
GCTGGCTCCAGATTTCGAACAACAA 147 295 1095 Antisense
Sequence Source Affymetrix Proprietary Database