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[181093_at] 7TM chemoreceptor, srx family

Description F31F4.4 /REP_DB=WormBase Gene ID /WP=CE09824 /TR=O17136 /GB=AAG24088.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 10      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 34.6
(-0.2)
A 		7.7
(-2.7)
A 		4.9
(-3)
A 		69.2
(3)
A 		64
B 7.6
(-3)
A 		11.5
(-2.7)
A 		13.4
(-2.5)
A 		78.7
(3)
A 		71
C 3.1
(-3)
A 		40.3
(-0.1)
A 		6.1
(-2.8)
A 		81
(3)
A 		78
avr 15.1
(-2.4) 		19.8
(-2) 		8.1
(-3) 		76.3
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 37.1
(1.1)
A 		8
(-2.5)
A 		52.9
(3)
A 		4.3
(-3)
A 		8
(-2.5)
A 		3.9
(-3)
A 		49
B 6.8
(-2)
A 		29.6
(2.9)
A 		30.3
(3)
A 		13.4
(-0.6)
A 		22.7
(1.4)
A 		2.3
(-3)
A 		28
C 4.6
(-3)
A 		45.8
(3)
A 		5.2
(-2.9)
A 		10.7
(-2.1)
A 		25.9
(0.1)
A 		6.5
(-2.7)
A 		41
avr 16.2
(-0.2) 		27.8
(2.6) 		29.5
(3) 		9.5
(-1.7) 		18.9
(0.5) 		4.2
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.6
(3)
A 		1.7
(-2.8)
A 		1.3
(-3)
A 		10.1
(1.7)
A 		11
B 2.4
(-3)
A 		2.8
(-2.8)
A 		3.1
(-2.7)
A 		16.8
(3)
A 		14
C 1
(-3)
A 		11.6
(2)
A 		2.1
(-2.5)
A 		13.7
(3)
A 		13
avr 5.3
(-1.4) 		5.4
(-1.3) 		2.2
(-3) 		13.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.8
(0.3)
A 		2.8
(-2)
A 		11.5
(3)
A 		1.1
(-2.9)
A 		2.4
(-2.2)
A 		1
(-3)
A 		11
B 2.4
(-2)
A 		9.8
(3)
A 		7.4
(1.4)
A 		3.5
(-1.2)
A 		9.2
(2.6)
A 		0.9
(-3)
A 		9
C 1.7
(-2.8)
A 		14
(3)
A 		1.3
(-3)
A 		2.2
(-2.6)
A 		8.4
(0.4)
A 		2.2
(-2.6)
A 		13
avr 3.6
(-1.2) 		8.9
(3) 		6.7
(1.2) 		2.3
(-2.3) 		6.7
(1.2) 		1.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15756
Sequence Type Exemplar sequence
Representative Public ID F31F4.4 NCBI
Target Description F31F4.4 /REP_DB=WormBase Gene ID /WP=CE09824 /TR=O17136 /GB=AAG24088.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070890 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-21) (srx-21) mRNA, complete cds. 11/11 None
SNAP00000012369 ENSEMBL cdna:SNAP chromosome:CEL140:V:677601:678407:1 11/11 None
F31F4.4 ENSEMBL cdna:known chromosome:CEL140:V:677398:678698:1 gene:F31F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:677397-678407(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-21
Ensembl F31F4.4
Entrez Gene 185166 Entrez gene
SwissProt O17136 EMBL-EBI
WormBase CE36541 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503291 Serpentine Receptor, class X family member (srx-21) [Caenorhabditis elegans] gb|AAG24088.2| Serpentine receptor, class x protein 21 [Caenorhabditis elegans] 1.0E-165
blast NP_503291 Serpentine Receptor, class X family member (srx-21) [Caenorhabditis elegans] gb|AAG24088.2| Serpentine receptor, class x protein 21 [Caenorhabditis elegans] 1.0E-142
blast NP_503292 Serpentine Receptor, class X family member (srx-22) [Caenorhabditis elegans] gb|AAG24087.2| Serpentine receptor, class x protein 22 [Caenorhabditis elegans] 2.0E-95
blast NP_503292 Serpentine Receptor, class X family member (srx-22) [Caenorhabditis elegans] gb|AAG24087.2| Serpentine receptor, class x protein 22 [Caenorhabditis elegans] 6.0E-86
blast CAE62226 Hypothetical protein CBG06278 [Caenorhabditis briggsae] 3.0E-83
blast CAE66221 Hypothetical protein CBG11463 [Caenorhabditis briggsae] 5.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503291.2 7 5-27,48-67,82-104,124-146,166-188,219-238,248-270
F31F4.4 7 5-27,48-67,82-104,124-146,166-188,219-238,248-270
SNAP00000012369 6 5-27,34-53,68-90,110-132,152-174,224-246
Sequence
Target Sequence 
>C. ELEGANS:181093_AT
ttgttctacgtttgcccgatgcaattaacggattttgaaccttttgtaaaattctccaaa
tacattggtctagcagctatgattatctatgaggcatctatgaatttgcatttgataatt
gcttgcaatcgattatttgcagtgtttttaccttttcattatgatcaactgtttacaaat
tacaacacaaaattcatggtggctttttcctggctgattggattattcatttgtacattg
ttctattttatcttgggttgtcactttttctacagcgacacttctttcaccttcgggttt
cgggaaacacggcgatgcaccaagatcacgtggtactcggattttatgctcaacaactcg
ctggtcatggtcacattagttttcaacctattgacagcttacaaggcaggcactaccagt
aggagtatgttgcaagctgcaggttcaagtatgtcaaagcagctgaaacgacgggaaagg
aatttcctgcggcagtcgtttttccaggggttatctatgtttgctggtcagctgacgtat
tatttaacagcgccattggtggactcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTCTACGTTTGCCCGATGCAAT 83 703 184 Antisense
TATTTGCAGTGTTTTTACCTTTTCA 361 661 317 Antisense
AATTCATGGTGGCTTTTTCCTGGCT 186 175 374 Antisense
GGGTTGTCACTTTTTCTACAGCGAC 347 497 438 Antisense
GGGAAACACGGCGATGCACCAAGAT 289 495 485 Antisense
GTGGTACTCGGATTTTATGCTCAAC 618 489 513 Antisense
TTATGCTCAACAACTCGCTGGTCAT 103 681 527 Antisense
GACAGCTTACAAGGCAGGCACTACC 150 369 576 Antisense
TTCCTGCGGCAGTCGTTTTTCCAGG 469 699 667 Antisense
GGGTTATCTATGTTTGCTGGTCAGC 263 497 691 Antisense
TAACAGCGCCATTGGTGGACTCGAA 503 637 728 Antisense
Sequence Source Affymetrix Proprietary Database