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[181092_at]

Description R10F2.5 /REP_DB=WormBase Gene ID /WP=CE12710 /TR=O01911 /GB=AAB54268.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 55      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 95.5
(3)
A 		19.8
(-2.3)
A 		52.8
(-0)
A 		10.2
(-3)
A 		85
B 89.3
(3)
A 		10.3
(-3)
A 		12.4
(-2.8)
A 		45
(-0.4)
A 		79
C 10.1
(-3)
A 		11.5
(-2.6)
A 		22.8
(0.7)
A 		30.6
(3)
A 		21
avr 65
(3) 		13.9
(-3) 		29.3
(-1.2) 		28.6
(-1.3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 33.5
(3)
A 		5
(-3)
A 		19.4
(0)
A 		6.2
(-2.7)
A 		6.6
(-2.7)
A 		20.3
(0.2)
A 		29
B 10.9
(-1.8)
A 		4
(-3)
A 		7.7
(-2.4)
A 		15.5
(-1)
A 		8.5
(-2.2)
A 		38.6
(3)
A 		35
C 4.9
(-3)
A 		16
(-1.5)
A 		18.2
(-1.3)
A 		4.8
(-3)
A 		51
(3)
A 		5.1
(-3)
A 		46
avr 16.4
(0.5) 		8.3
(-3) 		15.1
(-0) 		8.8
(-2.8) 		22
(3) 		21.3
(2.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 34.8
(3)
A 		4.3
(-2.5)
A 		13.8
(-0.8)
A 		1.5
(-3)
A 		33
B 28.5
(3)
A 		2.5
(-3)
A 		2.9
(-2.9)
A 		9.6
(-1.4)
A 		26
C 3.3
(-3)
A 		3.3
(-3)
A 		8
(3)
A 		5.2
(-0.6)
A 		5
avr 22.2
(3) 		3.4
(-3) 		8.2
(-1.5) 		5.4
(-2.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.2
(3)
A 		1.8
(-2.7)
A 		4.2
(0.4)
A 		1.6
(-3)
A 		2
(-2.5)
A 		4.9
(1.3)
A 		5
B 3.8
(-1.9)
A 		1.3
(-3)
A 		1.9
(-2.7)
A 		4.1
(-1.7)
A 		3.4
(-2)
A 		14.4
(3)
A 		13
C 1.8
(-2.7)
A 		4.9
(-1.5)
A 		4.6
(-1.6)
A 		1
(-3)
A 		16.5
(3)
A 		1.7
(-2.7)
A 		16
avr 3.9
(-1) 		2.7
(-2.4) 		3.6
(-1.4) 		2.2
(-3) 		7.3
(3) 		7
(2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6965
Sequence Type Exemplar sequence
Representative Public ID R10F2.5 NCBI
Target Description R10F2.5 /REP_DB=WormBase Gene ID /WP=CE12710 /TR=O01911 /GB=AAB54268.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065239 NCBI Caenorhabditis elegans R10F2.5 (R10F2.5) mRNA, complete cds. 11/11 None
GENEFINDER00000016980 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2920356:2924748:-1 11/11 None
R10F2.5 ENSEMBL cdna:known chromosome:CEL140:III:2923652:2924748:-1 gene:R10F2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016976 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2923651-2924748(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10F2.5
Entrez Gene 187786 Entrez gene
SwissProt O01911 EMBL-EBI
WormBase CE12710 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20200.1.S1_AT similar to oxidored-nitro domain-containing protein isoform 1 cfa
CANINE_2:CFA.20200.1.S1_S_AT similar to oxidored-nitro domain-containing protein isoform 1 cfa
CANINE_2:CFAAFFX.6001.1.S1_AT similar to oxidored-nitro domain-containing protein isoform 1 cfa
CHICKEN:GGA.2808.1.S1_AT similar to oxidored-nitro domain-containing protein gga
HU35KSUBC:RC_W95442_AT chromosome 1 open reading frame 102 hs
U133_X3P:HS.184361.0.A1_3P_AT chromosome 1 open reading frame 102 hs
HG-U133_PLUS_2:227359_AT chromosome 1 open reading frame 102 hs
HG-U133B:227359_AT chromosome 1 open reading frame 102 hs
HG-U95B:41899_AT chromosome 1 open reading frame 102 hs
HG-U95D:80758_AT chromosome 1 open reading frame 102 hs
HG-U95D:80761_G_AT chromosome 1 open reading frame 102 hs
HG-U95E:90756_AT chromosome 1 open reading frame 102 hs
HG-U95C:58287_AT Chromosome 1 open reading frame 102 hs
HG-U95D:80763_AT Chromosome 1 open reading frame 102 hs
HG-U95E:91105_AT Chromosome 1 open reading frame 102 hs
MG-U74BV2:112769_AT RIKEN cDNA 1810007P19 gene mm
MOE430B:1434223_AT RIKEN cDNA 1810007P19 gene mm
MOUSE430_2:1434223_AT RIKEN cDNA 1810007P19 gene mm
MU19KSUBC:TC40826_AT RIKEN cDNA 1810007P19 gene, mRNA (cDNA clone MGC:54797 IMAGE:6309923) mm
RAE230B:1383678_AT similar to RIKEN cDNA 1810007P19 (predicted) rn
RAT230_2:1383678_AT similar to RIKEN cDNA 1810007P19 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_497640 R10F2.5 [Caenorhabditis elegans] gb|AAB54268.1| Hypothetical protein R10F2.5 [Caenorhabditis elegans] 1.0E-122
blast NP_497640 R10F2.5 [Caenorhabditis elegans] gb|AAB54268.1| Hypothetical protein R10F2.5 [Caenorhabditis elegans] 1.0E-118
blast CAE69525 Hypothetical protein CBG15734 [Caenorhabditis briggsae] 1.0E-104
blast CAE69525 Hypothetical protein CBG15734 [Caenorhabditis briggsae] 1.0E-103
blast NP_497639 R10F2.4 [Caenorhabditis elegans] gb|AAB54267.1| Hypothetical protein R10F2.4 [Caenorhabditis elegans] 7.0E-48
blast CAG03496 unnamed protein product [Tetraodon nigroviridis] 7.0E-36
Sequence
Target Sequence 
>C. ELEGANS:181092_AT
gatcatgttaggattcctcgccaaaaagacgcttgacgaggtgttcaaggggcacgggac
ccccacaagagtaggactgaagatgtttttcgaaaaagttgctcattgctcaattatgag
attgaatgagaatagtatggacaaacttttcgatctgatgatgatgtcctataagtttgc
acttatgaagatgactatgccagagcagataatgaccatcactgtgaatcatcttcgtgc
acttttagacttggtcccattagataaggacattggagcagcagtggagcatgcctatac
tatggctttcacattctacaggccgctgggaccaatgggatggtttatgttgcggaactc
gttgctggtattctttcaggacacccgagtaaaagtatcaatgttcataaaagactgccg
acagttgccgaatgggagattcgtgctcttcgataaagcctcaccggtgcagctgatgtt
ggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATGTTAGGATTCCTCGCCAAA 278 421 144 Antisense
CACTGTGAATCATCTTCGTGCACTT 269 199 363 Antisense
TCGTGCACTTTTAGACTTGGTCCCA 264 605 378 Antisense
GGAGCATGCCTATACTATGGCTTTC 246 521 429 Antisense
ATGGCTTTCACATTCTACAGGCCGC 136 51 445 Antisense
TACAGGCCGCTGGGACCAATGGGAT 37 645 460 Antisense
GGAACTCGTTGCTGGTATTCTTTCA 663 529 497 Antisense
GTATTCTTTCAGGACACCCGAGTAA 314 453 511 Antisense
ACTGCCGACAGTTGCCGAATGGGAG 327 89 557 Antisense
TCGTGCTCTTCGATAAAGCCTCACC 584 603 584 Antisense
CTCACCGGTGCAGCTGATGTTGGGA 41 229 603 Antisense
Sequence Source Affymetrix Proprietary Database