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[181091_at]

Description Y69E1A.2 /REP_DB=WormBase Gene ID /WP=CE22809 /TR=Q9XW38 /GB=CAA22257.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 4.6
(-3)
A 		9.6
(-0.6)
A 		7.9
(-1.4)
A 		17.1
(3)
A 		13
B 3.9
(-2.2)
A 		6.6
(3)
A 		5.2
(0.3)
A 		3.5
(-3)
A 		3
C 25.4
(-1.5)
A 		6.7
(-3)
A 		6.4
(-3)
A 		80.2
(3)
A 		74
avr 11.3
(-1.9) 		7.6
(-2.8) 		6.5
(-3) 		33.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 767
1 2 3 4 5 6 range
A 6.2
(-3)
A 		4.9
(-3)
A 		3
(-3)
A 		26.2
(-2.8)
A 		430.6
(0.6)
P 		715.2
(3)
P 		712
B 5.6
(-3)
A 		18.9
(-2.9)
A 		4.6
(-3)
A 		21.5
(-2.9)
A 		537.6
(1.2)
P 		769.8
(3)
P 		765
C 3.9
(-3)
A 		5.6
(-3)
A 		2.9
(-3)
A 		58.2
(-2.5)
A 		635.5
(2.2)
P 		730.8
(3)
P 		728
avr 5.2
(-3) 		9.8
(-2.9) 		3.5
(-3) 		35.3
(-2.7) 		534.6
(1.3) 		738.6
(3) 		735
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.7
(-3)
A 		2.1
(0)
A 		2.1
(0)
A 		2.5
(3)
A 		1
B 1.2
(0.3)
A 		1.6
(3)
A 		1.2
(0.3)
A 		0.7
(-3)
A 		1
C 8.4
(0.4)
A 		1.9
(-3)
A 		2.2
(-2.8)
A 		13.5
(3)
A 		12
avr 3.8
(0.2) 		1.9
(-2.8) 		1.8
(-3) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.7
(-3)
A 		0.7
(-3)
A 		6.7
(-2.8)
A 		129.9
(1.5)
P 		174.1
(3)
P 		173
B 1.9
(-3)
A 		6.3
(-2.9)
A 		1.1
(-3)
A 		5.7
(-2.9)
A 		218.4
(1.6)
P 		287
(3)
P 		286
C 1.5
(-3)
A 		1.7
(-3)
A 		0.7
(-3)
A 		11.7
(-2.7)
A 		205.6
(2)
P 		244.6
(3)
P 		244
avr 1.5
(-3) 		3.2
(-2.9) 		0.8
(-3) 		8
(-2.8) 		184.6
(1.7) 		235.2
(3) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8940
Sequence Type Exemplar sequence
Representative Public ID Y69E1A.2 NCBI
Target Description Y69E1A.2 /REP_DB=WormBase Gene ID /WP=CE22809 /TR=Q9XW38 /GB=CAA22257.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069638 NCBI Caenorhabditis elegans Y69E1A.2 (Y69E1A.2) mRNA, complete cds. 11/11 None
SNAP00000037372 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10949848:10951046:1 11/11 None
GENEFINDER00000037382 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10949848:10951046:1 11/11 None
Y69E1A.2 ENSEMBL cdna:known chromosome:CEL140:IV:10949787:10951102:1 gene:Y69E1A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10949853-10951052(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69E1A.2
Entrez Gene 177992 Entrez gene
SwissProt Q9XW38 EMBL-EBI
WormBase CE22809 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22257 Hypothetical protein Y69E1A.2 [Caenorhabditis elegans] ref|NP_502039.1| Y69E1A.2 [Caenorhabditis elegans] 0.0
blast CAE73710 Hypothetical protein CBG21223 [Caenorhabditis briggsae] 0.0
blast CAE56304 Hypothetical protein CBG23962 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181091_AT
acatcatcacccgtaactgcattggtgggccaccatcttgtgattgtgccaactgtggaa
gtggaccaaaggttcgtgtcgagagagatgaatggatggacattcgtgagggtgatgcat
ggccaactcgtcaacttgtcaaggctcttgataagactcttgatactttgccaggtgtca
atccagatcaatacgttgcactttggtacatgcagggagaacctgtcatgggtcgtgtat
ggaatgagggtggaaaggtggctgccaacttctcgtggttcaataacgaatacaccaaga
atgttggatctatccaacttctcgttcatctgcctgataaccttcgtggtttcgattatg
gatggatttcgttcccagaagctgccaaattcggagacaaagaatggcatccagttcatg
tgaacaaccacaagggtgacatctcagtgggagttgtcaatgtttctggaggaaagcaaa
ttttggcaaaggtcgatgttcgtaatgaaaagtacggatatggttatcaaggaaaagagc
atactgcttctgcaaaatcttgtgctgacaatactactgtcttgtgccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCATCACCCGTAACTGCATTGG 506 105 491 Antisense
TGGGCCACCATCTTGTGATTGTGCC 136 555 516 Antisense
TGAGGGTGATGCATGGCCAACTCGT 197 545 597 Antisense
AGACTCTTGATACTTTGCCAGGTGT 125 71 644 Antisense
TTGCCAGGTGTCAATCCAGATCAAT 599 701 658 Antisense
GATCAATACGTTGCACTTTGGTACA 62 423 676 Antisense
TTGGATCTATCCAACTTCTCGTTCA 261 709 794 Antisense
ATCTGCCTGATAACCTTCGTGGTTT 459 33 818 Antisense
ATGGATGGATTTCGTTCCCAGAAGC 445 49 848 Antisense
GAGCATACTGCTTCTGCAAAATCTT 447 389 1027 Antisense
GACAATACTACTGTCTTGTGCCGTA 443 363 1057 Antisense
Sequence Source Affymetrix Proprietary Database