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[181090_at]

Description T16G12.8 /REP_DB=WormBase Gene ID /WP=CE23987 /TR=Q9U366 /GB=CAB54306.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 2
(-3)
A 		3.3
(-2.9)
A 		18.1
(-1.4)
A 		61.4
(3)
A 		59
B 5.7
(-3)
A 		9.1
(-2.3)
A 		35.1
(3)
A 		7.8
(-2.6)
A 		29
C 25.8
(-0.8)
A 		10.5
(-2.3)
A 		3.7
(-3)
A 		65
(3)
M 		61
avr 11.2
(-2.4) 		7.6
(-3) 		19
(-1.2) 		44.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 8.4
(-2.9)
A 		44.4
(-1.9)
A 		19.5
(-2.6)
A 		5.9
(-3)
A 		64.3
(-1.4)
P 		220.2
(3)
P 		214
B 28
(-2.4)
A 		4.4
(-3)
A 		11.5
(-2.8)
A 		37.8
(-2.1)
A 		69.9
(-1.3)
P 		234.9
(3)
P 		231
C 21.7
(-2.6)
A 		7
(-3)
A 		8.1
(-3)
A 		18.2
(-2.7)
A 		121.8
(0.2)
P 		224.7
(3)
P 		218
avr 19.4
(-2.8) 		18.6
(-2.8) 		13
(-3) 		20.6
(-2.8) 		85.3
(-1) 		226.6
(3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		4.7
(-0.1)
A 		9
(3)
A 		8
B 1.8
(-2.9)
A 		2.2
(-2.5)
A 		8.1
(3)
A 		1.7
(-3)
A 		6
C 8.5
(1.5)
A 		3
(-1.9)
A 		1.3
(-3)
A 		11
(3)
M 		10
avr 3.7
(-1) 		2
(-3) 		4.7
(0.1) 		7.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 1.6
(-3)
A 		15.8
(-1.4)
A 		4.2
(-2.7)
A 		1.5
(-3)
A 		19.4
(-0.9)
P 		53.6
(3)
P 		52
B 9.8
(-2.4)
A 		1.5
(-3)
A 		2.8
(-2.9)
A 		10
(-2.4)
A 		28.4
(-1.1)
P 		87.6
(3)
P 		86
C 8.1
(-2.5)
A 		2.1
(-3)
A 		2.1
(-3)
A 		3.7
(-2.9)
A 		39.4
(0.1)
P 		75.2
(3)
P 		73
avr 6.5
(-2.7) 		6.5
(-2.7) 		3
(-3) 		5.1
(-2.8) 		29.1
(-0.7) 		72.1
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6986
Sequence Type Exemplar sequence
Representative Public ID T16G12.8 NCBI
Target Description T16G12.8 /REP_DB=WormBase Gene ID /WP=CE23987 /TR=Q9U366 /GB=CAB54306.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066832 NCBI Caenorhabditis elegans T16G12.8 (T16G12.8) mRNA, complete cds. 11/11 None
SNAP00000010169 ENSEMBL cdna:SNAP chromosome:CEL140:III:10060764:10061742:1 9/11 None
GENEFINDER00000010179 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10060764:10061742:1 9/11 None
T16G12.8 ENSEMBL cdna:known chromosome:CEL140:III:10059191:10061808:1 gene:T16G12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10059186-10061738(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G12.8
Entrez Gene 176418 Entrez gene
SwissProt Q9U366 EMBL-EBI
WormBase CE23987 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54306 Hypothetical protein T16G12.8 [Caenorhabditis elegans] ref|NP_499233.1| T16G12.8 [Caenorhabditis elegans] 0.0
blast CAB54306 Hypothetical protein T16G12.8 [Caenorhabditis elegans] ref|NP_499233.1| T16G12.8 [Caenorhabditis elegans] 1.0E-102
blast CAE65054 Hypothetical protein CBG09898 [Caenorhabditis briggsae] 8.0E-61
blast CAE65054 Hypothetical protein CBG09898 [Caenorhabditis briggsae] 3.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499233.1 7 50-72,93-111,169-191,219-236,251-273,280-302,327-349
T16G12.8 7 50-72,93-111,169-191,219-236,251-273,280-302,327-349
SNAP00000010169 4 27-44,59-81,88-110,135-157
GENEFINDER00000010179 4 27-44,59-81,88-110,135-157
Sequence
Target Sequence 
>C. ELEGANS:181090_AT
ctccctttcatttttactcatcggtctattcttattctattttcttcttctctgaaaatg
tgcacagttgcctacgaaaaaatggacgttggagttgaaaatgtttcaattttccgtcga
cttcaaaaagttgactttcgtgtctggttcttcatgtttgtcattggaagtattgcattt
gacgtcacaaaattggaatatttggtacaatatggattggtacgccacacaattcatatt
ccaatttgtttgattttcaatgggattccactttatgcttctgtttcaaacaatctttcc
gtattttccttcatcaaggcgtattcgacattcttccttcttgtctctacaatcatcgct
acactgggccctatttggataatcttcgagttcaacacgggagctccagaacagattcga
ttggttatggaacatggtgacactcatgaaatggaatttattcaacgccttggttactgt
attctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCTTTCATTTTTACTCATCGGT 642 231 532 Antisense
ACTCATCGGTCTATTCTTATTCTAT 288 101 547 Antisense
TGTTTCAATTTTCCGTCGACTTCAA 697 559 633 Antisense
GTGTCTGGTTCTTCATGTTTGTCAT 400 487 671 Antisense
TGGTACGCCACACAATTCATATTCC 74 551 749 Antisense
AATGGGATTCCACTTTATGCTTCTG 450 163 790 Antisense
TCTTTCCGTATTTTCCTTCATCAAG 674 615 825 Antisense
AAGGCGTATTCGACATTCTTCCTTC 53 163 847 Antisense
TTGTCTCTACAATCATCGCTACACT 297 707 872 Antisense
GCTACACTGGGCCCTATTTGGATAA 143 303 889 Antisense
AACGCCTTGGTTACTGTATTCTCTT 516 145 995 Antisense
Sequence Source Affymetrix Proprietary Database