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[181089_at] 7TM chemoreceptor, srw family

Description F26D2.11 /REP_DB=WormBase Gene ID /WP=CE18641 /TR=Q9XV61 /GB=CAB04181.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 01      6grp_cgc > 96      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 21.4
(-3)
A 		22.5
(-2.9)
A 		28.4
(-2.4)
A 		88.8
(3)
P 		67
B 24.6
(-1.3)
A 		4.6
(-3)
A 		29.3
(-0.9)
A 		74.9
(3)
P 		70
C 17.8
(-1.5)
A 		2.8
(-3)
A 		8.2
(-2.5)
A 		63.8
(3)
A 		61
avr 21.3
(-2) 		10
(-3) 		22
(-1.9) 		75.8
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 25.3
(3)
A 		2.1
(-3)
A 		3.8
(-2.6)
A 		21.8
(2.1)
A 		24.3
(2.7)
A 		3.1
(-2.7)
A 		23
B 1.1
(-3)
A 		23.1
(3)
A 		12.9
(0.2)
A 		19.1
(1.9)
A 		3
(-2.5)
A 		15.8
(1)
A 		22
C 1.8
(-3)
A 		30.4
(3)
A 		2.2
(-2.9)
A 		26.3
(2.1)
A 		20.5
(0.9)
A 		18.6
(0.5)
A 		29
avr 9.4
(-1.8) 		18.5
(1.5) 		6.3
(-3) 		22.4
(3) 		15.9
(0.6) 		12.5
(-0.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.8
(-0.9)
A 		4.9
(-3)
A 		7.4
(-1.1)
A 		13
(3)
P 		8
B 7.9
(-0.3)
A 		1.1
(-3)
A 		6.8
(-0.7)
A 		16
(3)
P 		15
C 5.9
(0.1)
A 		0.8
(-3)
A 		2.9
(-1.7)
A 		10.8
(3)
A 		10
avr 7.2
(-0.3) 		2.3
(-3) 		5.7
(-1.1) 		13.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.7
(0.6)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		5.5
(1.4)
A 		7.3
(3)
A 		0.8
(-2.9)
A 		7
B 0.4
(-3)
A 		7.7
(3)
A 		3.1
(-0.8)
A 		5.1
(0.9)
A 		1.2
(-2.3)
A 		5.9
(1.5)
A 		7
C 0.6
(-3)
A 		9.3
(3)
A 		0.6
(-3)
A 		5.3
(0.2)
A 		6.6
(1.1)
A 		6.2
(0.9)
A 		9
avr 1.9
(-2.5) 		5.9
(3) 		1.5
(-3) 		5.3
(2.2) 		5
(1.8) 		4.3
(0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14125
Sequence Type Exemplar sequence
Representative Public ID F26D2.11 NCBI
Target Description F26D2.11 /REP_DB=WormBase Gene ID /WP=CE18641 /TR=Q9XV61 /GB=CAB04181.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074750 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-29) (srw-29) mRNA, complete cds. 11/11 None
SNAP00000037738 ENSEMBL cdna:SNAP chromosome:CEL140:V:16425900:16426325:-1 9/11 None
GENEFINDER00000037744 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16421016:16431733:-1 11/11 None
F26D2.11 ENSEMBL cdna:known chromosome:CEL140:V:16425682:16427090:-1 gene:F26D2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16425681-16427090(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-29
Ensembl F26D2.11
Entrez Gene 184965 Entrez gene
SwissProt Q9XV61 EMBL-EBI
WormBase CE18641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04181 Hypothetical protein F26D2.11 [Caenorhabditis elegans] ref|NP_507151.1| Serpentine Receptor, class W family member (srw-29) [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
blast CAB05800 Hypothetical protein T08G3.7 [Caenorhabditis elegans] ref|NP_507164.1| T08G3.7 [Caenorhabditis elegans] 0.0
blast CAB04560 Hypothetical protein K03D7.2 [Caenorhabditis elegans] ref|NP_507435.2| Serpentine Receptor, class W family member (srw-31) [Caenorhabditis elegans] 1.0E-116
blast CAB04561 Hypothetical protein K03D7.11 [Caenorhabditis elegans] ref|NP_507436.1| Serpentine Receptor, class W family member (srw-32) [Caenorhabditis elegans] 1.0E-107
blast CAB04181 Hypothetical protein F26D2.11 [Caenorhabditis elegans] ref|NP_507151.1| Serpentine Receptor, class W family member (srw-29) [Caenorhabditis elegans] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.8E-29
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.7E-23
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.2E-28
Pfam IPR001357 EMBL-EBI BRCT 3.2E-13
Pfam IPR002110 EMBL-EBI Ankyrin 4.9E-8
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507151.1 7 27-49,56-77,105-127,148-167,216-238,266-288,303-325
F26D2.11 7 27-49,56-77,105-127,148-167,216-238,266-288,303-325
SNAP00000037738 2 59-81,109-131
GENEFINDER00000037744 8 818-840,1124-1143,1197-1219,1226-1247,1275-1297,1318-1337,1436-1458,1470-1492
Sequence
Target Sequence 
>C. ELEGANS:181089_AT
gcatttccgatatgggcactttactataccaagttgtgttctgcaaaggttcccggatgg
atgccattcactaactgtcatcgcttttccgagaactcaaccaaaattagcattgatttt
caaataaataggttgttcggaagcactttgatctacgaaattgatcttcttatcgaggga
gttctactagaactgatcccatcgattattctcccaatcactacaattggattggtcaag
gatttaaaggaagcacagaagaactcaatgtcaattaaatcctcaacaaaaagccatgat
actctacgttctataaaattagtgactttcatgacaatatcatttcttttcacaactaca
ccacatggacttatgtacgttattggaatgttcaataccgataaacctggtctagttatg
ataatcttgaaatttgcgagacttttcacttttctgacaactctcaatggcatcgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTCCGATATGGGCACTTTACT 650 303 490 Antisense
TGTGTTCTGCAAAGGTTCCCGGATG 516 549 524 Antisense
GATGGATGCCATTCACTAACTGTCA 522 407 545 Antisense
AACTGTCATCGCTTTTCCGAGAACT 209 143 562 Antisense
GGTTGTTCGGAAGCACTTTGATCTA 87 509 620 Antisense
GATCTTCTTATCGAGGGAGTTCTAC 696 419 652 Antisense
TTCTACTAGAACTGATCCCATCGAT 524 689 671 Antisense
CATCGATTATTCTCCCAATCACTAC 20 211 689 Antisense
ATCATTTCTTTTCACAACTACACCA 687 29 828 Antisense
GACTTTTCACTTTTCTGACAACTCT 558 371 929 Antisense
TGACAACTCTCAATGGCATCGCTCA 641 571 944 Antisense
Sequence Source Affymetrix Proprietary Database