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[181088_at]

Description Y48A6B.2 /REP_DB=WormBase Gene ID /WP=CE19185 /TR=Q9XXD6 /GB=CAA19524.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 42
(3)
A 		15.8
(-3)
A 		17.6
(-2.6)
A 		23.8
(-1.2)
A 		26
B 23.1
(0.9)
A 		22.8
(0.6)
A 		25.1
(3)
A 		19.4
(-3)
A 		6
C 26.1
(-1)
A 		28.1
(-0.5)
A 		41.7
(3)
A 		18.4
(-3)
A 		23
avr 30.4
(3) 		22.2
(-2) 		28.1
(1.6) 		20.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 22.6
(-2.5)
A 		48.8
(-0)
A 		79.9
(3)
A 		29.5
(-1.9)
A 		32.3
(-1.6)
A 		17.7
(-3)
A 		62
B 19.3
(-1.1)
A 		33.2
(1)
A 		46.2
(3)
A 		6.4
(-3)
A 		26.6
(0)
A 		7.3
(-2.9)
A 		40
C 18
(-2.4)
A 		46.3
(1)
A 		63.2
(3)
A 		13.4
(-3)
A 		56.8
(2.2)
A 		14.4
(-2.9)
A 		50
avr 20
(-2.2) 		42.8
(0.6) 		63.1
(3) 		16.4
(-2.6) 		38.6
(0.1) 		13.1
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 15.3
(3)
A 		3.4
(-3)
A 		4.6
(-2.4)
A 		3.5
(-2.9)
A 		12
B 7.4
(3)
A 		5.6
(-0.3)
A 		5.8
(0.1)
A 		4.1
(-3)
A 		3
C 8.6
(-0.1)
A 		8.1
(-0.4)
A 		14.5
(3)
A 		3.1
(-3)
A 		11
avr 10.4
(3) 		5.7
(-1.1) 		8.3
(1.1) 		3.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.2
(-3)
A 		17.4
(3)
A 		17.4
(3)
A 		7.5
(-1.5)
A 		9.8
(-0.5)
A 		4.3
(-3)
A 		13
B 6.7
(0.2)
A 		11.1
(2.9)
A 		11.2
(3)
A 		1.7
(-3)
A 		10.8
(2.7)
A 		2.7
(-2.4)
A 		10
C 6.7
(-1.5)
A 		14.1
(1.4)
A 		16.1
(2.1)
A 		2.7
(-3)
A 		18.4
(3)
A 		4.8
(-2.2)
A 		16
avr 5.9
(-1.9) 		14.2
(2.6) 		14.9
(3) 		4
(-2.9) 		13
(2) 		3.9
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6920
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.2 NCBI
Target Description Y48A6B.2 /REP_DB=WormBase Gene ID /WP=CE19185 /TR=Q9XXD6 /GB=CAA19524.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067011 NCBI Caenorhabditis elegans Y48A6B.2 (Y48A6B.2) mRNA, complete cds. 11/11 None
SNAP00000033002 ENSEMBL cdna:SNAP chromosome:CEL140:III:10990608:10991716:1 11/11 None
GENEFINDER00000033026 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10990620:10991716:1 11/11 None
Y48A6B.2 ENSEMBL cdna:known chromosome:CEL140:III:10990668:10991716:1 gene:Y48A6B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10990663-10991712(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48A6B.2
Entrez Gene 190010 Entrez gene
SwissProt Q9XXD6 EMBL-EBI
WormBase CE19185 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19524 Hypothetical protein Y48A6B.2 [Caenorhabditis elegans] ref|NP_499412.1| Y48A6B.2 [Caenorhabditis elegans] 8.0E-98
blast CAA19524 Hypothetical protein Y48A6B.2 [Caenorhabditis elegans] ref|NP_499412.1| Y48A6B.2 [Caenorhabditis elegans] 9.0E-98
blast CAA19524 Hypothetical protein Y48A6B.2 [Caenorhabditis elegans] ref|NP_499412.1| Y48A6B.2 [Caenorhabditis elegans] 1.0E-97
blast CAE71357 Hypothetical protein CBG18260 [Caenorhabditis briggsae] 2.0E-67
blast CAE71357 Hypothetical protein CBG18260 [Caenorhabditis briggsae] 7.0E-66
blast CAE71357 Hypothetical protein CBG18260 [Caenorhabditis briggsae] 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:181088_AT
gttatcaatcggatcctccgtaccctcaaatcctcccgtcgtttctgtcttttcctgtct
acaactgactcactgctccaaaacgtgcgctcagtgcttcccggtgccacatatctcgac
attagtccaccgctaacgtggaaggaaccccaaatggccgtgtcacttcagaaacatgtt
tattcgattgttccgactgtattctacaatttgacagaggtgccgcctcccgagatgtat
gagattttaatgaaaagtgaggagaaggaggtgtgctatcacaataagcctctcgagctg
cccgatgacattttattcgtgtttgtggccaagaatctggggcatatacctgatcagata
cggaaattgatggaagtaattgtggtttcaatcccattggaacctatcgaagacagagag
aaaattgagagaaacgagctatcaagccttcttggcgagttcaccgccgccgacattctc
gaatctcgtgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCAATCGGATCCTCCGTACCC 642 423 31 Antisense
GTCTTTTCCTGTCTACAACTGACTC 66 451 77 Antisense
AACTGACTCACTGCTCCAAAACGTG 273 141 93 Antisense
ATATCTCGACATTAGTCCACCGCTA 679 19 141 Antisense
GAAGGAACCCCAAATGGCCGTGTCA 101 313 171 Antisense
TCGATTGTTCCGACTGTATTCTACA 690 603 214 Antisense
TGCCGCCTCCCGAGATGTATGAGAT 542 585 251 Antisense
ATCACAATAAGCCTCTCGAGCTGCC 633 27 308 Antisense
CGAGCTGCCCGATGACATTTTATTC 127 251 324 Antisense
TCAAGCCTTCTTGGCGAGTTCACCG 54 633 472 Antisense
GCCGACATTCTCGAATCTCGTGATT 474 285 499 Antisense
Sequence Source Affymetrix Proprietary Database