[Home] | [Total List]

[181087_at]

Description ZK993.2 /REP_DB=WormBase Gene ID /WP=CE24755 /TR=Q9N4L4 /GB=AAF40015.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3
(-1.2)
A 		3.7
(3)
A 		2.7
(-3)
A 		3.3
(0.6)
A 		1
B 16.9
(3)
A 		9.4
(-1)
A 		5.6
(-3)
A 		16.8
(2.9)
A 		11
C 24
(1.4)
A 		7.4
(-1.8)
A 		1.1
(-3)
A 		32.1
(3)
A 		31
avr 14.6
(1.8) 		6.8
(-1.4) 		3.1
(-3) 		17.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 35.4
(3)
A 		3.2
(-3)
A 		9.4
(-1.8)
A 		8.4
(-2)
A 		18.4
(-0.2)
A 		16.1
(-0.6)
A 		32
B 2.4
(-2.5)
A 		12.8
(0.3)
A 		23
(3)
A 		8.9
(-0.7)
A 		0.4
(-3)
A 		1.2
(-2.8)
A 		23
C 19.9
(1)
A 		15.5
(0)
A 		11.8
(-0.8)
A 		3.2
(-2.6)
A 		1.5
(-3)
A 		29.4
(3)
A 		28
avr 19.2
(3) 		10.5
(-1.2) 		14.7
(0.8) 		6.8
(-3) 		6.8
(-3) 		15.6
(1.3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(3)
A 		0.8
(0)
A 		0.7
(-1)
A 		0.5
(-3)
A 		1
B 5.4
(3)
A 		2.3
(-1.5)
A 		1.3
(-3)
A 		3.6
(0.4)
A 		4
C 8
(3)
A 		2.1
(-1.7)
A 		0.4
(-3)
A 		5.4
(0.9)
A 		8
avr 4.8
(3) 		1.7
(-1.7) 		0.8
(-3) 		3.2
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.5
(3)
A 		1.1
(-3)
A 		2
(-2)
A 		2.1
(-1.9)
A 		5.6
(2)
A 		3.9
(0.1)
A 		5
B 0.8
(-2.3)
A 		4.2
(1.4)
A 		5.6
(3)
A 		2.4
(-0.6)
A 		0.2
(-3)
A 		0.5
(-2.7)
A 		5
C 7.4
(1.5)
A 		4.7
(-0.3)
A 		3
(-1.4)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		9.8
(3)
A 		9
avr 4.9
(3) 		3.3
(-0) 		3.5
(0.4) 		1.7
(-3) 		2.1
(-2.3) 		4.7
(2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.39
Sequence Type Exemplar sequence
Representative Public ID ZK993.2 NCBI
Target Description ZK993.2 /REP_DB=WormBase Gene ID /WP=CE24755 /TR=Q9N4L4 /GB=AAF40015.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058420 NCBI Caenorhabditis elegans ZK993.2 (ZK993.2) mRNA, complete cds. 11/11 None
GENEFINDER00000037214 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1107584:1115503:1 11/11 None
SNAP00000037211 ENSEMBL cdna:SNAP chromosome:CEL140:I:1113104:1115503:1 11/11 None
ZK993.2 ENSEMBL cdna:known chromosome:CEL140:I:1108930:1115503:1 gene:ZK993.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1108929-1115503(+) 99.83 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK993.2
Entrez Gene 191481 Entrez gene
SwissProt Q9N4L4 EMBL-EBI
WormBase CE24755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF40015 Hypothetical protein ZK993.2 [Caenorhabditis elegans] ref|NP_490821.1| ZK993.2 [Caenorhabditis elegans] 0.0
blast AAF40015 Hypothetical protein ZK993.2 [Caenorhabditis elegans] ref|NP_490821.1| ZK993.2 [Caenorhabditis elegans] 1.0E-161
blast AAK68546 Hypothetical protein Y67D8B.1 [Caenorhabditis elegans] ref|NP_500297.2| Y67D8B.1 [Caenorhabditis elegans] 6.0E-15
blast AAK68546 Hypothetical protein Y67D8B.1 [Caenorhabditis elegans] ref|NP_500297.2| Y67D8B.1 [Caenorhabditis elegans] 3.0E-14
blast AAF59466 Hypothetical protein Y38C1AA.6 [Caenorhabditis elegans] ref|NP_499873.1| Y38C1AA.6 [Caenorhabditis elegans] 5.0E-12
blast CAE60872 Hypothetical protein CBG04583 [Caenorhabditis briggsae] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:181087_AT
gacgcgacttgatttctagagtgagaaaactaaaagcggaagagctgaaaattcatcaaa
accatctgcaaatgcatattcaggagaacacatacccggagcttaatgagaaattgcaaa
aaatcgataattcgttttccgaaattttaggtcaacaggaagagtacggagaattcgatt
acgaaatagcggaaaaaatggaaaatttcgagtcggagttcaaggaaaagcagctagttg
ttctggaagtcgacgatgattttgagaaattttataagcatcaggcgttgctcgaagagc
ttcaaagtctgaaaacagcaatggattccggaatgcaaaaacttgctgtaaaaatgcaga
aattcaatatttatctggaaaatatgcggcgaaatttggaaacttgtgaatttgaagagt
tcaaaattgtcatttacatggatattattgaagaaaacacgttgatcgaaaaatcaataa
ttgagattattcagttccacgagcggattgttttttgtcatttgatgcatttgaaatact
ttcctgtaacttctgagtctacaattgaagatgtggtttttgatcgatttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGACTTGATTTCTAGAGTGAG 112 381 1709 Antisense
GGAGAACACATACCCGGAGCTTAAT 531 517 1791 Antisense
GAAAATTTCGAGTCGGAGTTCAAGG 187 353 1909 Antisense
GCAGCTAGTTGTTCTGGAAGTCGAC 96 313 1938 Antisense
GCATCAGGCGTTGCTCGAAGAGCTT 270 309 1986 Antisense
TGGATTCCGGAATGCAAAAACTTGC 584 507 2030 Antisense
ATATGCGGCGAAATTTGGAAACTTG 278 19 2090 Antisense
TGAGATTATTCAGTTCCACGAGCGG 478 567 2190 Antisense
CCACGAGCGGATTGTTTTTTGTCAT 66 275 2205 Antisense
ACTTTCCTGTAACTTCTGAGTCTAC 574 99 2246 Antisense
AGATGTGGTTTTTGATCGATTTATC 564 65 2277 Antisense
Sequence Source Affymetrix Proprietary Database