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[181086_at]

Description C15A11.2 /REP_DB=WormBase Gene ID /WP=CE08170 /TR=Q93209 /GB=CAB01960.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 28.8
(-3)
A 		102.6
(0.5)
A 		49.5
(-2)
A 		156.7
(3)
P 		128
B 68.8
(3)
A 		8
(-3)
A 		32.7
(-0.6)
A 		48.7
(1)
A 		61
C 49.2
(-1.6)
A 		38.4
(-2.1)
A 		18
(-3)
A 		153.7
(3)
P 		136
avr 48.9
(-1.9) 		49.7
(-1.9) 		33.4
(-3) 		119.7
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 19.6
(-2.7)
A 		15
(-3)
A 		26.4
(-2.2)
A 		33
(-1.7)
P 		53.6
(-0.2)
P 		98.4
(3)
P 		83
B 11.2
(-3)
A 		28.9
(-1.6)
A 		37.5
(-0.9)
A 		50.1
(0.2)
A 		85.2
(3)
P 		58.2
(0.8)
P 		74
C 32.5
(-1.8)
A 		54.3
(0.8)
A 		22.6
(-3)
A 		61.9
(1.7)
A 		59.9
(1.5)
P 		72.8
(3)
P 		50
avr 21.1
(-3) 		32.7
(-1.7) 		28.8
(-2.2) 		48.3
(-0.1) 		66.2
(1.9) 		76.5
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 10.5
(-3)
A 		22.3
(2.7)
A 		12.9
(-1.8)
A 		22.9
(3)
P 		12
B 21.9
(3)
A 		2
(-3)
A 		7.6
(-1.3)
A 		10.4
(-0.5)
A 		20
C 16.3
(0.1)
A 		11
(-1.6)
A 		6.3
(-3)
A 		25.9
(3)
P 		20
avr 16.2
(1.1) 		11.8
(-1.4) 		8.9
(-3) 		19.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.6
(-3)
A 		5.3
(-2.5)
A 		5.7
(-2.4)
A 		8.4
(-1.6)
P 		16.2
(0.7)
P 		24
(3)
P 		20
B 3.9
(-3)
A 		9.6
(-1.9)
A 		9.1
(-2)
A 		13.3
(-1.2)
A 		34.6
(3)
P 		21.7
(0.5)
P 		31
C 12.1
(-1)
A 		16.6
(0.5)
A 		5.8
(-3)
A 		12.4
(-0.9)
A 		19.4
(1.4)
P 		24.4
(3)
P 		19
avr 6.5
(-3) 		10.5
(-1.6) 		6.9
(-2.9) 		11.4
(-1.3) 		23.4
(3) 		23.4
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.899
Sequence Type Exemplar sequence
Representative Public ID C15A11.2 NCBI
Target Description C15A11.2 /REP_DB=WormBase Gene ID /WP=CE08170 /TR=Q93209 /GB=CAB01960.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059686 NCBI Caenorhabditis elegans C15A11.2 (C15A11.2) mRNA, complete cds. 11/11 None
SNAP00000007965 ENSEMBL cdna:SNAP chromosome:CEL140:I:7396239:7396845:1 11/11 None
GENEFINDER00000007978 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7396239:7396845:1 11/11 None
C15A11.2 ENSEMBL cdna:known chromosome:CEL140:I:7396239:7396845:1 gene:C15A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7396169-7396776(+) 82.57 100.0
Public Domain and Genome References
Gene Title
Ensembl C15A11.2
Entrez Gene 182625 Entrez gene
SwissProt Q93209 EMBL-EBI
WormBase CE08170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01960 Hypothetical protein C15A11.2 [Caenorhabditis elegans] ref|NP_492087.1| C15A11.2 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:181086_AT
gagatcaaagacgaagacagccaagaagaaaacctccactctcacgcattcaaaatccgt
gacatcgacggatccaaaagaatatgagaaagaaaaacgacgtgatgataaggatgtttt
aagaatgacaaaagaagatgttgggaaagagagaaagaaggaggcaccgaagaaggaaca
atcgaaggatcaattggtaaaggagcaaccaaaagagcaaccaaaagagcaaccaaagga
gcagcctaaggagcaacctaaggatcaggcgaaggatgtagtaaaggatatagctaaacc
cccattgaaggaacaaccaaaagaacaaccaaaggaacagccaaagaagaaagaagagga
aaaaacaagcaagaacatggagataagtggaatggatatggttatgaaggacgacgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCAAAGACGAAGACAGCCAAG 148 397 60 Antisense
GCCAAGAAGAAAACCTCCACTCTCA 220 277 79 Antisense
TCCACTCTCACGCATTCAAAATCCG 528 587 94 Antisense
CGCATTCAAAATCCGTGACATCGAC 302 253 104 Antisense
GACATCGACGGATCCAAAAGAATAT 479 367 120 Antisense
AGGAGCAACCAAAAGAGCAACCAAA 273 55 260 Antisense
AAGGAGCAGCCTAAGGAGCAACCTA 199 161 295 Antisense
GGAGCAACCTAAGGATCAGGCGAAG 688 519 309 Antisense
AAGGATATAGCTAAACCCCCATTGA 217 159 343 Antisense
TAGCTAAACCCCCATTGAAGGAACA 678 569 350 Antisense
ATATGGTTATGAAGGACGACGGGAA 404 17 455 Antisense
Sequence Source Affymetrix Proprietary Database