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[181085_at]

Description C45G7.1 /REP_DB=WormBase Gene ID /WP=CE17548 /TR=O76359 /GB=AAC19180.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 20.1
(-1.2)
A 		11.3
(-2.2)
A 		4.6
(-3)
A 		55.9
(3)
A 		51
B 21
(3)
A 		19.2
(2.4)
A 		3
(-3)
A 		3.9
(-2.7)
A 		18
C 14.5
(-3)
A 		32.9
(2.2)
A 		16.8
(-2.4)
A 		35.8
(3)
A 		21
avr 18.5
(-0.4) 		21.1
(0.3) 		8.1
(-3) 		31.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.2
(-2.7)
A 		23.8
(1.1)
A 		33.7
(3)
A 		4.3
(-2.7)
A 		2.5
(-3)
A 		26.7
(1.7)
A 		31
B 17.9
(2.8)
A 		18.4
(3)
A 		5.2
(-1.8)
A 		4.9
(-1.9)
A 		1.9
(-3)
A 		2.9
(-2.6)
A 		17
C 10.1
(-1.2)
A 		13.4
(-0.5)
A 		29.1
(3)
A 		23.3
(1.7)
A 		1.8
(-3)
A 		14.6
(-0.2)
A 		27
avr 10.7
(-0.5) 		18.5
(1.8) 		22.7
(3) 		10.8
(-0.5) 		2.1
(-3) 		14.7
(0.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 7.3
(2.2)
A 		2.4
(-2)
A 		1.2
(-3)
A 		8.2
(3)
A 		7
B 6.7
(3)
A 		4.7
(1)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		6
C 4.8
(-3)
A 		9.5
(3)
A 		5.8
(-1.7)
A 		6
(-1.5)
A 		5
avr 6.3
(3) 		5.5
(1.7) 		2.6
(-3) 		5
(0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		8.5
(3)
A 		7.3
(2.1)
A 		1.1
(-2.7)
A 		0.7
(-3)
A 		6.5
(1.5)
A 		8
B 6.2
(3)
A 		6.1
(2.9)
A 		1.3
(-2.4)
A 		1.3
(-2.4)
A 		0.8
(-3)
A 		1.1
(-2.7)
A 		5
C 3.7
(-0.3)
A 		4.1
(0.1)
A 		7.4
(3)
A 		4.7
(0.6)
A 		0.6
(-3)
A 		4.9
(0.8)
A 		7
avr 3.6
(0.2) 		6.2
(3) 		5.3
(2) 		2.4
(-1.1) 		0.7
(-3) 		4.2
(0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10730
Sequence Type Exemplar sequence
Representative Public ID C45G7.1 NCBI
Target Description C45G7.1 /REP_DB=WormBase Gene ID /WP=CE17548 /TR=O76359 /GB=AAC19180.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067807 NCBI Caenorhabditis elegans C45G7.1 (C45G7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000040037 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2467679:2471433:1 11/11 None
C45G7.1 ENSEMBL cdna:known chromosome:CEL140:IV:2470341:2471447:1 gene:C45G7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040035 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2470346-2471453(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G7.1
Entrez Gene 183474 Entrez gene
SwissProt O76359 EMBL-EBI
WormBase CE17548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500208 C45G7.1 [Caenorhabditis elegans] gb|AAC19180.1| Hypothetical protein C45G7.1 [Caenorhabditis elegans] 4.0E-90
blast NP_500208 C45G7.1 [Caenorhabditis elegans] gb|AAC19180.1| Hypothetical protein C45G7.1 [Caenorhabditis elegans] 2.0E-83
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 7.0E-83
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 4.0E-70
blast CAE65750 Hypothetical protein CBG10836 [Caenorhabditis briggsae] 8.0E-35
blast NP_001024594 F22A3.6a [Caenorhabditis elegans] gb|AAA83197.1| Hypothetical protein F22A3.6a [Caenorhabditis elegans] 5.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 5.7E-38
Pfam IPR008597 EMBL-EBI Destabilase 3.4E-26
Pfam IPR008597 EMBL-EBI Destabilase 8.6E-79
Pfam IPR008597 EMBL-EBI Destabilase 5.7E-38
Pfam IPR008597 EMBL-EBI Destabilase 9.4E-24
Sequence
Target Sequence 
>C. ELEGANS:181085_AT
tacactccctcttcaaaagtcacgtagaagcctcctggggtatttctgaccaatgtatgc
actgcatgtgcctagggaactttgtcataaaacttccgtactatattgactgtggggagc
ctggaaagcaacgtggagagtctactgagagtgcttggaagcggtgcgcagatgatctgg
attgtgcggagacttgtatgatgaactattatcaccgctacaaaagccaatgcaatgggc
ttggaatgagcgaatgcgaggctagctttcagaactattatcaccgctacaaaagccaat
gcgatggacttggaatgggcgaatgcgaggtttttgcacgtaatcacaatggagggccaa
ccgggtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACTCCCTCTTCAAAAGTCACGT 531 641 20 Antisense
AGAAGCCTCCTGGGGTATTTCTGAC 406 73 45 Antisense
ATTTCTGACCAATGTATGCACTGCA 114 17 61 Antisense
GCACTGCATGTGCCTAGGGAACTTT 698 315 78 Antisense
ACTTCCGTACTATATTGACTGTGGG 301 101 111 Antisense
GAGTGCTTGGAAGCGGTGCGCAGAT 170 401 168 Antisense
GATGAACTATTATCACCGCTACAAA 34 413 219 Antisense
GAGCGAATGCGAGGCTAGCTTTCAG 169 387 267 Antisense
TTCAGAACTATTATCACCGCTACAA 631 685 287 Antisense
GGGCGAATGCGAGGTTTTTGCACGT 295 491 336 Antisense
CACAATGGAGGGCCAACCGGGTGCC 88 193 364 Antisense
Sequence Source Affymetrix Proprietary Database