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[181084_at]

Description T23E7.1 /REP_DB=WormBase Gene ID /WP=CE14062 /TR=O17342 /GB=AAB71256.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 16      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 4
(-3)
A 		18.4
(-0.2)
A 		34.7
(3)
A 		32.9
(2.6)
A 		31
B 13.6
(-0.6)
A 		21.7
(3)
A 		11.7
(-1.4)
A 		8.1
(-3)
A 		14
C 23.4
(-2.5)
A 		22
(-2.7)
A 		20
(-3)
A 		59
(3)
A 		39
avr 13.7
(-3) 		20.7
(-0.9) 		22.1
(-0.4) 		33.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 32
(2.4)
A 		10.8
(-2.3)
A 		11
(-2.3)
A 		7.7
(-3)
A 		11.2
(-2.2)
A 		34.5
(3)
A 		27
B 8.8
(-0.3)
A 		13
(1.9)
A 		4.3
(-2.7)
A 		3.7
(-3)
A 		15
(3)
A 		14.3
(2.6)
A 		11
C 2.7
(-3)
A 		38.8
(3)
A 		6.7
(-2.3)
A 		6.4
(-2.4)
A 		3.8
(-2.8)
A 		4.6
(-2.7)
A 		36
avr 14.5
(0.4) 		20.9
(3) 		7.3
(-2.4) 		5.9
(-3) 		10
(-1.4) 		17.8
(1.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-3)
A 		4
(-1)
A 		9.1
(3)
A 		4.8
(-0.4)
A 		8
B 4.3
(1.2)
A 		5.4
(3)
A 		2.7
(-1.4)
A 		1.7
(-3)
A 		4
C 7.8
(-0.5)
A 		6.3
(-3)
A 		7
(-1.8)
A 		9.9
(3)
A 		4
avr 4.5
(-3) 		5.2
(-0.7) 		6.3
(3) 		5.5
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.9
(0.7)
A 		3.8
(-1.2)
A 		2.4
(-2.5)
A 		1.9
(-3)
A 		3.4
(-1.6)
A 		8.4
(3)
A 		7
B 3.1
(-0.5)
A 		4.3
(0.9)
A 		1.1
(-2.9)
A 		1
(-3)
A 		6.1
(3)
A 		5.3
(2.1)
A 		5
C 1
(-3)
A 		11.8
(3)
A 		1.7
(-2.6)
A 		1.3
(-2.8)
A 		1.2
(-2.9)
A 		1.5
(-2.7)
A 		11
avr 3.3
(-0.8) 		6.6
(3) 		1.7
(-2.7) 		1.4
(-3) 		3.6
(-0.5) 		5.1
(1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17722
Sequence Type Exemplar sequence
Representative Public ID T23E7.1 NCBI
Target Description T23E7.1 /REP_DB=WormBase Gene ID /WP=CE14062 /TR=O17342 /GB=AAB71256.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078448 NCBI Caenorhabditis elegans T23E7.1 (T23E7.1) mRNA, complete cds. 11/11 None
SNAP00000038215 ENSEMBL cdna:SNAP chromosome:CEL140:X:17644556:17649255:-1 10/11 None
T23E7.1 ENSEMBL cdna:known chromosome:CEL140:X:17644556:17648846:-1 gene:T23E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038220 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl T23E7.1
Entrez Gene 188796 Entrez gene
SwissProt O17342 EMBL-EBI
WormBase CE14062 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71256 Hypothetical protein T23E7.1 [Caenorhabditis elegans] ref|NP_510849.1| T23E7.1 [Caenorhabditis elegans] 0.0
blast NP_491240 T03F1.4 [Caenorhabditis elegans] gb|AAB42240.2| Hypothetical protein T03F1.4 [Caenorhabditis elegans] 0.0
blast tpe|CAJ00230.1 TPA: gag-pol polyprotein [Schistosoma mansoni] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.3E-42
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.6E-7
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 7.8E-40
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.3E-42
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.6E-7
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 7.8E-40
Sequence
Target Sequence 
>C. ELEGANS:181084_AT
gaggtccaagtggggtctcgagttcaacgaactcacgttaatcagctgcgaaaaaagttt
gtagattcagcttttcgtagtttgtcagattcagccggtccaggaacacagaatgtggtt
agctcttctcggttttcgtctggtggtttgagtgataaacaattgtatgatggaactgat
actcgtggaagattagatctaagtgaacttgaaccagaacctgagagctcaactacgcca
gagtcgccgaaagcttcaactatgggaaatcagatggtcaatgccgaaaacgggaaaggt
catatcaaccaaccgagcattgtcccaagccagtctccgcgacgaagtcaccgcatacga
tacgtgccaaaccggtatgatccctgctccgacaacaccttcacaacgggaaccggtcat
gtgcgaggatctagacatattccactagattcagcagccacacacaacgggagtcgatat
aacgcttctgcaggcaatcgtcttgtctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTCCAAGTGGGGTCTCGAGTTC 614 401 3469 Antisense
CGTAGTTTGTCAGATTCAGCCGGTC 660 245 3544 Antisense
TCTCGGTTTTCGTCTGGTGGTTTGA 169 611 3595 Antisense
ACCTGAGAGCTCAACTACGCCAGAG 262 87 3687 Antisense
TACGCCAGAGTCGCCGAAAGCTTCA 688 645 3702 Antisense
TATCAACCAACCGAGCATTGTCCCA 179 659 3771 Antisense
GAAGTCACCGCATACGATACGTGCC 115 335 3812 Antisense
GGGAACCGGTCATGTGCGAGGATCT 583 493 3876 Antisense
TATTCCACTAGATTCAGCAGCCACA 516 665 3906 Antisense
GGGAGTCGATATAACGCTTCTGCAG 655 495 3937 Antisense
TCTGCAGGCAATCGTCTTGTCTCTG 404 609 3955 Antisense
Sequence Source Affymetrix Proprietary Database