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[181083_at]

Description Y41C4A.9 /REP_DB=WormBase Gene ID /WP=CE20249 /TR=Q9U2I4 /GB=CAB63357.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_high_8_8 > 0      6grp_total > 95      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 476.8
(1.4)
P 		327
(-3)
P 		529.9
(3)
P 		391.5
(-1.1)
M 		203
B 375.4
(-3)
P 		516
(3)
A 		386.1
(-2.5)
P 		466.4
(0.9)
P 		141
C 522.2
(3)
P 		505.1
(2)
A 		418.3
(-3)
P 		434
(-2.1)
P 		104
avr 458.1
(3) 		449.4
(1.1) 		444.8
(0.1) 		430.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 222.3
(-3)
A 		514
(2.8)
P 		241.9
(-2.6)
A 		467.3
(1.9)
P 		363.4
(-0.2)
P 		522.9
(3)
P 		301
B 295.4
(-1.1)
A 		289.1
(-1.3)
A 		243
(-3)
A 		410.3
(3)
P 		318.1
(-0.3)
P 		334.9
(0.3)
P 		167
C 495.2
(2.2)
P 		355.3
(-1.8)
A 		441.8
(0.7)
P 		312.3
(-3)
P 		523.3
(3)
P 		347
(-2)
P 		211
avr 337.6
(-1.1) 		386.1
(2) 		308.9
(-3) 		396.6
(2.7) 		401.6
(3) 		401.6
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 173.6
(3)
P 		71
(-2.3)
P 		138.5
(1.2)
P 		57.3
(-3)
M 		116
B 119.7
(1.8)
P 		127.4
(3)
A 		89.5
(-3)
P 		99.4
(-1.4)
P 		38
C 172.9
(3)
P 		145.2
(1.3)
A 		145.8
(1.4)
P 		73.2
(-3)
P 		100
avr 155.4
(3) 		114.5
(-0.1) 		124.6
(0.7) 		76.6
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 41
(-3)
A 		182.8
(3)
P 		52.7
(-2.5)
A 		118.5
(0.3)
P 		109.7
(-0.1)
P 		127.3
(0.7)
P 		142
B 102.8
(0.7)
A 		96.2
(0.2)
A 		59
(-3)
A 		108.7
(1.2)
P 		129.2
(3)
P 		124.9
(2.6)
P 		70
C 183.6
(3)
P 		108.4
(-0.7)
A 		112.5
(-0.5)
P 		62.8
(-3)
P 		169.3
(2.3)
P 		116.2
(-0.3)
P 		121
avr 109.1
(0.4) 		129.1
(2.3) 		74.7
(-3) 		96.7
(-0.9) 		136.1
(3) 		122.8
(1.7) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7952
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.9 NCBI
Target Description Y41C4A.9 /REP_DB=WormBase Gene ID /WP=CE20249 /TR=Q9U2I4 /GB=CAB63357.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067115 NCBI Caenorhabditis elegans Y41C4A.9 (Y41C4A.9) mRNA, complete cds. 11/11 None
SNAP00000034890 ENSEMBL cdna:SNAP chromosome:CEL140:III:11710853:11718513:-1 11/11 None
GENEFINDER00000034909 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11710853:11718513:-1 11/11 None
Y41C4A.9.1 ENSEMBL cdna:known chromosome:CEL140:III:11710722:11718513:-1 gene:Y41C4A.9 11/11 None
Y41C4A.9.2 ENSEMBL cdna:known chromosome:CEL140:III:11710722:11718521:-1 gene:Y41C4A.9 11/11 None
Y41C4A.9.3 ENSEMBL cdna:known chromosome:CEL140:III:11710722:11718522:-1 gene:Y41C4A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11710848-11718509(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.9
Entrez Gene 176604 Entrez gene
SwissProt Q9U2I4 EMBL-EBI
WormBase CE20249 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63357 Hypothetical protein Y41C4A.9 [Caenorhabditis elegans] ref|NP_499516.1| Y41C4A.9 [Caenorhabditis elegans] 0.0
blast CAE67674 Hypothetical protein CBG13237 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010678 EMBL-EBI Protein of unknown function DUF1253 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181083_AT
gcaatatcgaaattcccctatgccaggagctgcacaaatttgaagttaaggatccaaacg
agacgtcggatttgagattcaagtattttgtggataagataatgccatcactaattcccc
gtactctgatcgtaattccatcatatttcgactttgtccgtgtccgaaatcacctgaaaa
aggccgaagagagttttgtaatgtgccatgaatacgctacgagagcaaaagtcgacagag
ctcgtgaaatgtttttccacgagagaaaaagctatttggttgtcactgaacgctggtatt
tcttcaatcgacgtcatttgactggtgttcaccgtgttgtattctaccaactgccatccc
atccactcttctactcggaattcattaatatgtccgacgccgagacctctcaacgtttcc
tagccgtgcttctcctctgcaaatacgatcgaattcgtctggaaaacacttttggcaccg
aaatggcagccgctgtgatgtccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATATCGAAATTCCCCTATGCCA 362 323 1208 Antisense
CCCGTACTCTGATCGTAATTCCATC 657 259 1325 Antisense
ATTCCATCATATTTCGACTTTGTCC 654 7 1342 Antisense
GACTTTGTCCGTGTCCGAAATCACC 686 367 1357 Antisense
AACGCTGGTATTTCTTCAATCGACG 499 145 1496 Antisense
GACGTCATTTGACTGGTGTTCACCG 360 377 1517 Antisense
GTGTTCACCGTGTTGTATTCTACCA 619 485 1532 Antisense
ATCCACTCTTCTACTCGGAATTCAT 430 39 1568 Antisense
ATTAATATGTCCGACGCCGAGACCT 587 11 1591 Antisense
GTGCTTCTCCTCTGCAAATACGATC 150 481 1633 Antisense
AATGGCAGCCGCTGTGATGTCCAAT 160 163 1689 Antisense
Sequence Source Affymetrix Proprietary Database