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[181081_at]

Description F11A10.5 /REP_DB=WormBase Gene ID /WP=CE03185 /TR=Q19337 /GB=CAA92595.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 95      6grp_total > 96      4grp_total > 15      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 530.5
(2.7)
P 		327.5
(-3)
P 		352.2
(-2.3)
P 		540.4
(3)
P 		213
B 539
(0.8)
P 		380.2
(-3)
P 		419
(-2.1)
P 		629
(3)
P 		249
C 610.5
(3)
P 		399
(-3)
P 		438.9
(-1.9)
P 		573.6
(2)
P 		212
avr 560
(2.4) 		368.9
(-3) 		403.4
(-2) 		581
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 568.5
(-0.9)
P 		466
(-2.4)
P 		421
(-3)
P 		711.3
(1.1)
P 		811.4
(2.5)
P 		849.4
(3)
P 		428
B 439.2
(-3)
P 		569.6
(-1.4)
P 		549.9
(-1.6)
P 		588.3
(-1.2)
P 		778.3
(1.2)
P 		925.7
(3)
P 		487
C 545.8
(-2.5)
P 		566.9
(-2.3)
P 		508.6
(-3)
P 		668.7
(-1)
P 		679
(-0.8)
P 		983.4
(3)
P 		475
avr 517.8
(-2.7) 		534.2
(-2.4) 		493.2
(-3) 		656.1
(-0.7) 		756.2
(0.7) 		919.5
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 193.1
(3)
P 		71.1
(-3)
P 		92.1
(-2)
P 		79.1
(-2.6)
P 		122
B 171.9
(3)
P 		93.9
(-3)
P 		97.1
(-2.8)
P 		134
(0.1)
P 		78
C 202.1
(3)
P 		114.7
(-2)
P 		153
(0.2)
P 		96.7
(-3)
P 		105
avr 189
(3) 		93.2
(-3) 		114.1
(-1.7) 		103.3
(-2.4) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 104.8
(-2.5)
P 		165.7
(-0.1)
P 		91.7
(-3)
P 		180.4
(0.5)
P 		244.8
(3)
P 		206.8
(1.5)
P 		153
B 152.8
(-2.5)
P 		189.6
(-1.4)
P 		133.5
(-3)
P 		155.8
(-2.4)
P 		316.2
(2.2)
P 		345.2
(3)
P 		212
C 202.3
(-0.8)
P 		173
(-1.7)
P 		129.4
(-3)
P 		134.5
(-2.8)
P 		219.7
(-0.3)
P 		329.2
(3)
P 		200
avr 153.3
(-1.8) 		176.1
(-1) 		118.2
(-3) 		156.9
(-1.7) 		260.2
(1.9) 		293.7
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9248
Sequence Type Exemplar sequence
Representative Public ID F11A10.5 NCBI
Target Description F11A10.5 /REP_DB=WormBase Gene ID /WP=CE03185 /TR=Q19337 /GB=CAA92595.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069893 NCBI Caenorhabditis elegans F11A10.5 (F11A10.5) mRNA, complete cds. 11/11 None
SNAP00000006207 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12094346:12096389:1 11/11 None
GENEFINDER00000006214 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12094346:12096389:1 11/11 None
F11A10.5 ENSEMBL cdna:known chromosome:CEL140:IV:12094341:12096654:1 gene:F11A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12094351-12096395(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A10.5
Entrez Gene 178152 Entrez gene
SwissProt Q19337 EMBL-EBI
WormBase CE03185 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597957_AT similar to suppression of tumorigenicity 7 isoform b cfa
CANINE:1586826_AT similar to suppression of tumorigenicity 7 isoform b cfa
CANINE_2:CFA.1303.1.A1_AT similar to suppression of tumorigenicity 7 isoform b cfa
CANINE_2:CFA.14122.1.A1_AT similar to suppression of tumorigenicity 7 isoform b cfa
CANINE_2:CFAAFFX.6058.1.S1_S_AT similar to suppression of tumorigenicity 7 isoform b cfa
DROSOPHILA_2:1634970_AT dm
DROSGENOME1:149148_AT dm
CHICKEN:GGA.6519.1.S1_S_AT suppression of tumorigenicity 7 gga
CHICKEN:GGAAFFX.22905.5.S1_S_AT suppression of tumorigenicity 7 gga
HG-U133_PLUS_2:207871_S_AT suppression of tumorigenicity 7 hs
HG-U133A:207871_S_AT suppression of tumorigenicity 7 hs
HG-U133A_2:207871_S_AT suppression of tumorigenicity 7 hs
HG-U133_PLUS_2:207524_AT suppression of tumorigenicity 7 hs
HG-U133A_2:207524_AT suppression of tumorigenicity 7 hs
HG-U133A:207524_AT suppression of tumorigenicity 7 hs
HG-FOCUS:207524_AT suppression of tumorigenicity 7 hs
HU35KSUBB:RC_T92561_S_AT suppression of tumorigenicity 7 hs
HU35KSUBB:RC_N74558_AT suppression of tumorigenicity 7 hs
HU35KSUBC:RC_AA043204_AT suppression of tumorigenicity 7 hs
U133_X3P:G11761625_3P_AT suppression of tumorigenicity 7 hs
U133_X3P:G11761623_3P_A_AT suppression of tumorigenicity 7 hs
HG-U95AV2:40038_AT suppression of tumorigenicity 7 hs
HG-U95AV2:40039_G_AT suppression of tumorigenicity 7 hs
HG-U95AV2:40040_AT suppression of tumorigenicity 7 hs
HG-U95B:58764_AT suppression of tumorigenicity 7 hs
HG-U95B:43891_AT ST7 overlapping transcript 2 (antisense non-coding RNA) hs
HG-U95D:67070_AT ST7 overlapping transcript 2 (antisense non-coding RNA) hs
HG-U95D:70117_AT ST7 overlapping transcript 2 (antisense non-coding RNA) hs
HG-U95E:70166_AT ST7 overlapping transcript 2 (antisense non-coding RNA) hs
HU35KSUBB:RC_Z39076_AT ST7 overlapping transcript 2 (antisense non-coding RNA) hs
HU35KSUBC:RC_D20826_AT ST7 overlapping transcript 2 (antisense non-coding RNA) hs
MOE430A:1418967_A_AT Suppression of tumorigenicity 7 mm
MOUSE430A_2:1418967_A_AT Suppression of tumorigenicity 7 mm
MOUSE430_2:1418967_A_AT Suppression of tumorigenicity 7 mm
MG-U74AV2:160591_AT Suppression of tumorigenicity 7 mm
MU19KSUBA:TC19860_AT Suppression of tumorigenicity 7, mRNA (cDNA clone MGC:30330 IMAGE:3660309) mm
RG-U34C:RC_AI229362_AT suppression of tumorigenicity 7 rn
RAE230B:1392925_AT suppression of tumorigenicity 7 rn
RAT230_2:1392925_AT suppression of tumorigenicity 7 rn
Protein Similarities
Method ID Description E-Value
blast CAA92595 Hypothetical protein F11A10.5 [Caenorhabditis elegans] ref|NP_502294.1| F11A10.5 [Caenorhabditis elegans] 0.0
blast CAE62180 Hypothetical protein CBG06227 [Caenorhabditis briggsae] 0.0
blast AAX31329 suppression of tumorigenicity 7 isoform a [Bos taurus] 1.0E-121
blast AAX31329 suppression of tumorigenicity 7 isoform a [Bos taurus] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR007311 EMBL-EBI ST7 1.0E-126
Pfam IPR007311 EMBL-EBI ST7 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502294.1 2 5-27,49-71
F11A10.5 2 5-27,49-71
SNAP00000006207 2 5-27,49-71
GENEFINDER00000006214 2 5-27,47-69
Sequence
Target Sequence 
>C. ELEGANS:181081_AT
tgcgctgcagactcatcaattcgtcgtggactttcttctgctgaacaaactgcaatcgaa
gcactgactcgtgcaatggagttcaatccacatgttccaccatatcttctcgaacttcga
tcaatgataatgccacctgaacactttttgaaacgtggagactctgaagcactggcctat
gcatttttccatattcaacattggaaacgaattgatggtgctcttcaacttcttagtatt
gtgtggaaggattttgttccaaaagtcagcaaagataaaaatgcattttcttcacagttg
gaatcagctgacaaagagttgctaccatcttggcacgaacagtccgtttttccgaaaact
gagggaactctcatgatgcttctacaaaccttcatctgcctcgctatctgtattctcgcc
gttctcgctcaacaatttccagcatcttctggcgagattttccgtactgctgcaacgatc
ggaatgcaattctacgaaaattctgtgtatacggtttctcaatgggcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCTGCAGACTCATCAATTCGTC 241 583 1039 Antisense
CAATTCGTCGTGGACTTTCTTCTGC 577 179 1055 Antisense
GTTCCACCATATCTTCTCGAACTTC 239 441 1132 Antisense
ATGCCACCTGAACACTTTTTGAAAC 277 41 1168 Antisense
GAAGCACTGGCCTATGCATTTTTCC 432 341 1204 Antisense
AGTTGCTACCATCTTGGCACGAACA 168 63 1355 Antisense
TTGGCACGAACAGTCCGTTTTTCCG 438 707 1368 Antisense
GAGGGAACTCTCATGATGCTTCTAC 625 401 1399 Antisense
CGTTCTCGCTCAACAATTTCCAGCA 599 247 1458 Antisense
GATTTTCCGTACTGCTGCAACGATC 441 429 1494 Antisense
GTATACGGTTTCTCAATGGGCGCCA 548 401 1545 Antisense
Sequence Source Affymetrix Proprietary Database