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[181080_at]

Description ZK813.2 /REP_DB=WormBase Gene ID /WP=CE05111 /TR=Q23605 /GB=AAB52653.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 5.2
(-2.8)
A 		33.3
(-0.4)
A 		2.6
(-3)
A 		72.3
(3)
A 		70
B 4.3
(-3)
A 		5.5
(-2.8)
A 		38.5
(3)
A 		6.5
(-2.6)
A 		34
C 2.2
(-3)
A 		2.7
(-2.8)
A 		5.1
(-1.9)
A 		17.5
(3)
A 		15
avr 3.9
(-3) 		13.8
(-0.9) 		15.4
(-0.6) 		32.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 11.5
(-2.9)
A 		3.2
(-3)
A 		26.1
(-2.7)
A 		6.5
(-3)
A 		433.8
(3)
P 		141.6
(-1.1)
A 		431
B 6.6
(-2.9)
A 		17.3
(-2.8)
A 		8.8
(-2.9)
A 		1.7
(-3)
A 		458.8
(3)
P 		153.5
(-1)
P 		457
C 4.2
(-3)
A 		37.1
(-2.4)
A 		8.9
(-2.9)
A 		8.9
(-2.9)
A 		326.1
(3)
P 		144.4
(-0.4)
M 		322
avr 7.4
(-3) 		19.2
(-2.8) 		14.6
(-2.9) 		5.7
(-3) 		406.2
(3) 		146.5
(-0.9) 		401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.9
(-2.3)
A 		7.2
(0.9)
A 		0.7
(-3)
A 		10.6
(3)
A 		10
B 1.4
(-2.9)
A 		1.3
(-3)
A 		8.9
(3)
A 		1.4
(-2.9)
A 		8
C 0.7
(-3)
A 		0.8
(-2.7)
A 		1.8
(-0.1)
A 		3
(3)
A 		2
avr 1.3
(-3) 		3.1
(-0.1) 		3.8
(1.1) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 2.1
(-3)
A 		1.2
(-3)
A 		5.7
(-2.8)
A 		1.7
(-3)
A 		130.9
(3)
P 		34.5
(-1.5)
A 		130
B 2.3
(-2.9)
A 		5.8
(-2.8)
A 		2.1
(-2.9)
A 		0.5
(-3)
A 		186.4
(3)
P 		57.2
(-1.2)
P 		186
C 1.6
(-3)
A 		11.3
(-2.4)
A 		2.3
(-3)
A 		1.8
(-3)
A 		105.5
(3)
P 		48.3
(-0.3)
M 		104
avr 2
(-3) 		6.1
(-2.8) 		3.4
(-2.9) 		1.3
(-3) 		140.9
(3) 		46.7
(-1) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18076
Sequence Type Exemplar sequence
Representative Public ID ZK813.2 NCBI
Target Description ZK813.2 /REP_DB=WormBase Gene ID /WP=CE05111 /TR=Q23605 /GB=AAB52653.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076193 NCBI Caenorhabditis elegans ZK813.2 (ZK813.2) mRNA, complete cds. 11/11 None
ZK813.2 ENSEMBL cdna:known chromosome:CEL140:X:3443813:3444178:1 gene:ZK813.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3443813-3444179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK813.2
Entrez Gene 191428 Entrez gene
SwissProt Q23605 EMBL-EBI
WormBase CE05111 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52653 Hypothetical protein ZK813.2 [Caenorhabditis elegans] ref|NP_508594.1| ZK813.2 [Caenorhabditis elegans] 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:181080_AT
tttcacctttgccttattattcttttttgtgtccgccgatgattacgatgattacaaaga
taaccgtgaagcctcgtgggagtacgaaagcattgatagcatccatggatatgttaccag
taaggcgtatccgcgaaaaaacagatcagcttcaaactccaactcccgctctcatgagcc
atctgatttgaaacctgctggctttggtttttctcaacataggtcaatcagaagatcaag
cgaatcacacgaagggagaagacacagttcaccaaatccacccaatcagcagctacctgc
aaattttccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCACCTTTGCCTTATTATTCTTT 290 673 27 Antisense
TTGTGTCCGCCGATGATTACGATGA 355 709 53 Antisense
GATAACCGTGAAGCCTCGTGGGAGT 74 421 85 Antisense
GAAAGCATTGATAGCATCCATGGAT 455 359 112 Antisense
TGTTACCAGTAAGGCGTATCCGCGA 512 553 138 Antisense
ACAGATCAGCTTCAAACTCCAACTC 542 107 167 Antisense
CCCGCTCTCATGAGCCATCTGATTT 321 261 191 Antisense
GAGCCATCTGATTTGAAACCTGCTG 419 385 202 Antisense
GCTTTGGTTTTTCTCAACATAGGTC 429 251 227 Antisense
AGAAGACACAGTTCACCAAATCCAC 262 75 283 Antisense
AGCAGCTACCTGCAAATTTTCCAAA 443 77 314 Antisense
Sequence Source Affymetrix Proprietary Database