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[181079_at]

Description W06G6.10 /REP_DB=WormBase Gene ID /WP=CE20155 /TR=Q9U341 /GB=CAB63324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 25.8
(-2.5)
A 		4.6
(-3)
A 		4.2
(-3)
A 		287
(3)
P 		283
B 13.9
(-3)
A 		17.3
(-2.9)
A 		17.7
(-2.9)
A 		296.5
(3)
P 		283
C 15.8
(-3)
A 		31.2
(-2.7)
A 		42.4
(-2.5)
A 		316.2
(3)
P 		300
avr 18.5
(-3) 		17.7
(-3) 		21.4
(-2.9) 		299.9
(3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 18.9
(-1.6)
A 		5.1
(-2.7)
A 		1.9
(-3)
A 		6
(-2.7)
A 		4.1
(-2.8)
A 		75.3
(3)
P 		73
B 18.6
(-1.9)
A 		3.3
(-3)
A 		2.9
(-3)
A 		3.1
(-3)
A 		46.8
(0)
M 		90.1
(3)
P 		87
C 3.6
(-3)
A 		18.9
(-2.1)
A 		12.5
(-2.5)
A 		5
(-2.9)
A 		10.3
(-2.6)
A 		103.4
(3)
P 		100
avr 13.7
(-2.4) 		9.1
(-2.7) 		5.8
(-2.9) 		4.7
(-3) 		20.4
(-1.9) 		89.6
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 9.4
(-1.8)
A 		1
(-3)
A 		1.1
(-3)
A 		42
(3)
P 		41
B 4.4
(-3)
A 		4.3
(-3)
A 		4.1
(-3)
A 		63.2
(3)
P 		59
C 5.2
(-3)
A 		9
(-2.5)
A 		14.8
(-1.8)
A 		53.3
(3)
P 		48
avr 6.3
(-2.8) 		4.8
(-3) 		6.7
(-2.8) 		52.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 3.5
(-2)
A 		1.8
(-2.5)
A 		0.4
(-3)
A 		1.5
(-2.6)
A 		1.2
(-2.7)
A 		18.3
(3)
P 		18
B 6.5
(-1.9)
A 		1.1
(-2.9)
A 		0.7
(-3)
A 		0.8
(-3)
A 		19
(0.3)
M 		33.6
(3)
P 		33
C 1.3
(-2.9)
A 		5.8
(-2.1)
A 		3.2
(-2.6)
A 		1
(-3)
A 		3.3
(-2.6)
A 		34.6
(3)
P 		34
avr 3.8
(-2.4) 		2.9
(-2.6) 		1.4
(-2.9) 		1.1
(-3) 		7.8
(-1.5) 		28.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13164
Sequence Type Exemplar sequence
Representative Public ID W06G6.10 NCBI
Target Description W06G6.10 /REP_DB=WormBase Gene ID /WP=CE20155 /TR=Q9U341 /GB=CAB63324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074812 NCBI Caenorhabditis elegans W06G6.10 (W06G6.10) mRNA, complete cds. 11/11 None
SNAP00000000234 ENSEMBL cdna:SNAP chromosome:CEL140:V:16649373:16649775:-1 11/11 None
W06G6.10 ENSEMBL cdna:known chromosome:CEL140:V:16649373:16649775:-1 gene:W06G6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000248 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16649372-16649775(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.10
Entrez Gene 189260 Entrez gene
SwissProt Q9U341 EMBL-EBI
WormBase CE20155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63324 Hypothetical protein W06G6.10 [Caenorhabditis elegans] ref|NP_507213.1| W06G6.10 [Caenorhabditis elegans] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:181079_AT
atggagtttggccgcaatccactgagcatgacttcaactaaaccaacgttgttaaatgtc
ctggatgatgttggagaagcagcgttacatgctattccaaaggtcgacgatataacctca
cataaaatttatgtgattgcagttcaaccagtatctttttcagatatagaaagccaggcg
gttaaacaagacgccagttctccaaacaactgctgctgctcctgcatgcacggcgttctt
cgcttctttgctgaattgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGTTTGGCCGCAATCCACTGA 57 51 13 Antisense
CCGCAATCCACTGAGCATGACTTCA 200 263 24 Antisense
AGCATGACTTCAACTAAACCAACGT 560 77 37 Antisense
CAACGTTGTTAAATGTCCTGGATGA 584 187 56 Antisense
GAAGCAGCGTTACATGCTATTCCAA 234 341 88 Antisense
CATGCTATTCCAAAGGTCGACGATA 308 209 100 Antisense
GTCGACGATATAACCTCACATAAAA 33 475 115 Antisense
GCAGTTCAACCAGTATCTTTTTCAG 622 311 151 Antisense
GGTTAAACAAGACGCCAGTTCTCCA 251 501 192 Antisense
GCCAGTTCTCCAAACAACTGCTGCT 54 279 205 Antisense
TTCTTCGCTTCTTTGCTGAATTGTG 613 689 248 Antisense
Sequence Source Affymetrix Proprietary Database