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[181078_at]

Description K04F1.6 /REP_DB=WormBase Gene ID /WP=CE19957 /TR=Q9TXL0 /GB=AAC78165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 36.5
(2)
A 		41.5
(3)
A 		12.1
(-3)
A 		27
(0)
A 		29
B 44.4
(1.8)
A 		35.7
(-3)
A 		46.6
(3)
A 		46.5
(2.9)
A 		11
C 29.8
(-1.4)
A 		33.4
(-0.7)
A 		21.6
(-3)
A 		52.8
(3)
A 		31
avr 36.9
(1) 		36.9
(1) 		26.8
(-3) 		42.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 11.5
(-3)
A 		27.3
(-1.6)
A 		53.5
(0.8)
A 		41.9
(-0.3)
A 		78.5
(3)
A 		19
(-2.3)
A 		67
B 39.2
(0.3)
A 		45.8
(0.9)
A 		70.2
(3)
A 		25
(-1)
A 		25.9
(-0.9)
A 		2.1
(-3)
A 		68
C 25.5
(-2.3)
A 		61.6
(1.7)
A 		32.5
(-1.5)
A 		73.9
(3)
A 		20.2
(-2.9)
A 		19
(-3)
A 		55
avr 25.4
(-1.1) 		44.9
(1.9) 		52.1
(3) 		46.9
(2.2) 		41.5
(1.4) 		13.4
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 13.3
(3)
A 		9
(0.4)
A 		3.2
(-3)
A 		4
(-2.5)
A 		10
B 14.2
(3)
A 		8.8
(-3)
A 		10.8
(-0.8)
A 		9.9
(-1.8)
A 		5
C 9.9
(3)
A 		9.6
(2.3)
A 		7.5
(-3)
A 		8.9
(0.5)
A 		2
avr 12.5
(3) 		9.1
(-0.8) 		7.2
(-3) 		7.6
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.1
(-3)
A 		9.7
(-0.9)
A 		11.7
(-0.3)
A 		10.6
(-0.6)
A 		23.7
(3)
A 		4.6
(-2.3)
A 		22
B 13.6
(1.7)
A 		15.2
(2.3)
A 		17
(3)
A 		6.6
(-0.9)
A 		10.5
(0.6)
A 		0.8
(-3)
A 		16
C 9.5
(-1.5)
A 		18.8
(3)
A 		8.3
(-2)
A 		14.9
(1.1)
A 		6.5
(-2.9)
A 		6.3
(-3)
A 		13
avr 8.4
(-0.5) 		14.6
(3) 		12.3
(1.7) 		10.7
(0.8) 		13.6
(2.4) 		3.9
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15304
Sequence Type Exemplar sequence
Representative Public ID K04F1.6 NCBI
Target Description K04F1.6 /REP_DB=WormBase Gene ID /WP=CE19957 /TR=Q9TXL0 /GB=AAC78165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071076 NCBI Caenorhabditis elegans K04F1.6 (K04F1.6) mRNA, complete cds. 11/11 None
K04F1.6 ENSEMBL cdna:known chromosome:CEL140:V:1670411:1672672:1 gene:K04F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1670410-1672672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.6
Entrez Gene 186992 Entrez gene
SwissProt Q9TXL0 EMBL-EBI
WormBase CE19957 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78165 Hypothetical protein K04F1.6 [Caenorhabditis elegans] ref|NP_503477.1| K04F1.6 [Caenorhabditis elegans] 0.0
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 3.0E-69
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 9.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.4E-8
Sequence
Target Sequence 
>C. ELEGANS:181078_AT
cctcgatactcccaaacaattctgatcaacaaatcatcatgaatatctataatatgccca
ttgaattgtgtttgtcaattgctgaagcgacaaatttcataattaacagaaatctttata
tgaaaacattgccacgccatttttgcaatttcaccggtgattctatttcgagtggcaaag
tctgtcaatttgaagaattgaccctgaaaaatatggactctggttgcgttattgtttgtg
gaaatgtaacaattgaagaggaggatgaggattttttttataaattgaaaaatatgcaat
ttttattggggagactatggataccaggaaaaccaagatcacttaacttttcaagcaatt
gggaatatggaatcaatttgatacatgggtttccactattatctgttacacataattcgg
tactagaaaccattgtaatgccaaggttaaagggtatacaactcagaactccattttgga
tagaactccataatgtcaatgagaagcttaagtcgttgccaaacattgttgatccttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCGATACTCCCAAACAATTCTGA 535 267 533 Antisense
ATATGCCCATTGAATTGTGTTTGTC 472 21 584 Antisense
GAAAACATTGCCACGCCATTTTTGC 109 353 654 Antisense
ACCGGTGATTCTATTTCGAGTGGCA 313 87 685 Antisense
GGACTCTGGTTGCGTTATTGTTTGT 141 523 747 Antisense
AGATCACTTAACTTTTCAAGCAATT 697 65 868 Antisense
TCAATTTGATACATGGGTTTCCACT 425 633 905 Antisense
GGGTTTCCACTATTATCTGTTACAC 109 497 919 Antisense
GGGTATACAACTCAGAACTCCATTT 320 497 984 Antisense
GAGAAGCTTAAGTCGTTGCCAAACA 15 391 1033 Antisense
GTTGCCAAACATTGTTGATCCTTAT 634 439 1047 Antisense
Sequence Source Affymetrix Proprietary Database