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[181077_at] 7TM chemoreceptor, srw family

Description C44C3.1 /REP_DB=WormBase Gene ID /WP=CE08707 /TR=P91160 /GB=AAG23984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 08      6grp_cgc > 64      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 6
(-3)
A 		7
(-2.9)
A 		80.4
(2.9)
A 		81.9
(3)
A 		76
B 8.1
(-2.8)
A 		15.9
(-2.1)
A 		6.5
(-3)
A 		67.1
(3)
A 		61
C 10.1
(-2.9)
A 		8.4
(-3)
A 		8.9
(-3)
A 		175.7
(3)
A 		167
avr 8.1
(-3) 		10.4
(-2.9) 		31.9
(-1.6) 		108.2
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 13
(-2.1)
A 		59.9
(3)
A 		52.6
(2.2)
A 		55.8
(2.6)
A 		23
(-1)
A 		5
(-3)
A 		55
B 8.9
(-2.7)
A 		44.8
(1.4)
A 		8.3
(-2.8)
A 		6.3
(-3)
A 		58.3
(3)
A 		7.3
(-2.9)
A 		52
C 7.9
(3)
A 		6.3
(-2.3)
A 		6.1
(-3)
A 		6.9
(-0.3)
A 		7.6
(2)
A 		7.6
(2)
A 		2
avr 9.9
(-2.3) 		37
(3) 		22.3
(0.1) 		23
(0.2) 		29.6
(1.5) 		6.6
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 2.2
(-2.8)
A 		1.5
(-3)
A 		21
(3)
A 		12
(0.2)
A 		20
B 2.6
(-2.5)
A 		3.9
(-1.9)
A 		1.5
(-3)
A 		14.3
(3)
A 		13
C 3.3
(-2.8)
A 		2.4
(-3)
A 		3.1
(-2.8)
A 		29.6
(3)
A 		27
avr 2.7
(-3) 		2.6
(-3) 		8.5
(-0.8) 		18.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.4
(-2.6)
A 		21.3
(3)
A 		11.4
(0)
A 		14.2
(0.9)
A 		7
(-1.3)
A 		1.2
(-3)
A 		20
B 3.1
(-2.6)
A 		14.9
(0.6)
A 		2
(-2.9)
A 		1.7
(-3)
A 		23.7
(3)
A 		2.7
(-2.7)
A 		22
C 2.9
(3)
A 		1.9
(-1)
A 		1.6
(-2.2)
A 		1.4
(-3)
A 		2.5
(1.4)
A 		2.5
(1.4)
A 		2
avr 2.8
(-2.6) 		12.7
(3) 		5
(-1.4) 		5.8
(-0.9) 		11.1
(2.1) 		2.1
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14965
Sequence Type Exemplar sequence
Representative Public ID C44C3.1 NCBI
Target Description C44C3.1 /REP_DB=WormBase Gene ID /WP=CE08707 /TR=P91160 /GB=AAG23984.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071409 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-124) (srw-124) mRNA, complete cds. 11/11 None
GENEFINDER00000011851 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2976414:2977713:1 11/11 None
C44C3.1 ENSEMBL cdna:known chromosome:CEL140:V:2976414:2977673:1 gene:C44C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2976413-2977673(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-124
Ensembl C44C3.1
Entrez Gene 183440 Entrez gene
SwissProt P91160 EMBL-EBI
WormBase CE08707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23984 Serpentine receptor, class w protein 124 [Caenorhabditis elegans] ref|NP_503810.1| Serpentine Receptor, class W family member (srw-124) [Caenorhabditis elegans] 0.0
blast AAN73866 Serpentine receptor, class w protein 118 [Caenorhabditis elegans] ref|NP_503811.1| Serpentine Receptor, class W family member (srw-118) [Caenorhabditis elegans] 1.0E-117
blast AAG24161 Serpentine receptor, class w protein 121 [Caenorhabditis elegans] ref|NP_503814.2| Serpentine Receptor, class W family member (srw-121) [Caenorhabditis elegans] 1.0E-115
blast AAN73867 Serpentine receptor, class w protein 117 [Caenorhabditis elegans] ref|NP_503812.1| Serpentine Receptor, class W family member (srw-117) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503810.1 7 36-58,70-92,130-149,161-183,227-249,270-289,309-331
C44C3.1 7 36-58,70-92,130-149,161-183,227-249,270-289,309-331
GENEFINDER00000011851 7 36-58,70-92,130-149,161-183,227-249,270-289,309-331
Sequence
Target Sequence 
>C. ELEGANS:181077_AT
aatttgcccatttcgatcttcaagtttttcgaaatccagtttgtttttgtgacaataagt
aaacatcattgtgctcctgaaggatcatattattttattgcttcatcagaacttttcctg
agagacaatggatttctagcgaaatacttcaattttttcaattcatttatgtcagatatg
attccatgcattctacttccaatagttacttgtttacttgttatggatttattgaaaaca
agaaaaaagtgcagagcaagaatctctgccaaaaacaacaattctcggggtaaaactgga
ctagtgttttgtgtagccataatgtttttcatcgttgaatttccatttgggttaagcgtg
ggatccgcttggctcttcatgagttctcccggcgtacagaatattttgaatttctttgga
tacatgtttaccgtcttgatcagcgtcaacgcttgtacgcatctcatagtttgtctcatc
gtgtcttcccagtatcgtagtacagccatttccgttctgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGCCCATTTCGATCTTCAAGT 150 175 526 Antisense
AACATCATTGTGCTCCTGAAGGATC 1 139 587 Antisense
TATTGCTTCATCAGAACTTTTCCTG 476 665 621 Antisense
ATATGATTCCATGCATTCTACTTCC 128 21 701 Antisense
TTAAGCGTGGGATCCGCTTGGCTCT 538 681 877 Antisense
TGAGTTCTCCCGGCGTACAGAATAT 134 567 905 Antisense
ATGTTTACCGTCTTGATCAGCGTCA 522 47 949 Antisense
CAGCGTCAACGCTTGTACGCATCTC 337 203 966 Antisense
TACGCATCTCATAGTTTGTCTCATC 300 649 981 Antisense
GTGTCTTCCCAGTATCGTAGTACAG 439 487 1006 Antisense
TAGTACAGCCATTTCCGTTCTGTCA 463 653 1023 Antisense
Sequence Source Affymetrix Proprietary Database