[Home] | [Total List]

[181076_at]

Description C53H9.2 /REP_DB=WormBase Gene ID /WP=CE26362 /TR=O01826 /GB=AAK68267.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 78      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8344
1 2 3 4 range
A 3021.7
(-1.9)
P 		1648.3
(-3)
P 		1792.7
(-2.9)
P 		9056.3
(3)
P 		7408
B 3239.1
(-1.7)
P 		1611.8
(-2.9)
P 		1503.7
(-3)
P 		9825.1
(3)
P 		8321
C 2946.4
(-1.9)
P 		1481
(-3)
P 		2138.1
(-2.5)
P 		9384.8
(3)
P 		7904
avr 3069.1
(-1.9) 		1580.4
(-3) 		1811.5
(-2.8) 		9422.1
(3) 		7842

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 736
1 2 3 4 5 6 range
A 1706.4
(3)
P 		1521.5
(1.2)
P 		1096.4
(-3)
P 		1484.1
(0.8)
P 		1478.6
(0.8)
P 		1625.8
(2.2)
P 		610
B 1427.4
(-1.2)
P 		1497.9
(-0.4)
P 		1260.2
(-3)
P 		1452.8
(-0.9)
P 		1592.4
(0.6)
P 		1818.2
(3)
P 		558
C 1727.9
(2)
P 		1533.5
(0.2)
P 		1441.1
(-0.6)
P 		1182.1
(-3)
P 		1475.3
(-0.3)
P 		1832.8
(3)
P 		651
avr 1620.6
(1.3) 		1517.6
(0.1) 		1265.9
(-3) 		1373
(-1.7) 		1515.4
(0) 		1758.9
(3) 		493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1745
1 2 3 4 range
A 1100.2
(1.6)
P 		357.8
(-3)
P 		468.6
(-2.3)
P 		1325.7
(3)
P 		968
B 1032.9
(-0.6)
P 		398.1
(-2.8)
P 		348.4
(-3)
P 		2093.7
(3)
P 		1745
C 975.3
(-0.1)
P 		425.8
(-3)
P 		745.2
(-1.3)
P 		1582.4
(3)
P 		1157
avr 1036.1
(0) 		393.9
(-3) 		520.7
(-2.4) 		1667.3
(3) 		1273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 314.6
(-1.5)
P 		541.1
(3)
P 		238.8
(-3)
P 		376.4
(-0.3)
P 		446.2
(1.1)
P 		395.8
(0.1)
P 		302
B 496.7
(0.1)
P 		498.6
(0.1)
P 		306
(-3)
P 		384.8
(-1.7)
P 		647
(2.5)
P 		678
(3)
P 		372
C 640.4
(3)
P 		467.9
(0.4)
P 		366.8
(-1.1)
P 		237.7
(-3)
P 		477.4
(0.6)
P 		613.5
(2.6)
P 		403
avr 483.9
(1.2) 		502.5
(1.6) 		303.9
(-3) 		333
(-2.3) 		523.5
(2.1) 		562.4
(3) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.190
Sequence Type Exemplar sequence
Representative Public ID C53H9.2 NCBI
Target Description C53H9.2 /REP_DB=WormBase Gene ID /WP=CE26362 /TR=O01826 /GB=AAK68267.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170804(11), NM_170805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170804 NCBI Caenorhabditis elegans C53H9.2a (C53H9.2) mRNA, complete cds. 11/11 None
NM_170805 NCBI Caenorhabditis elegans C53H9.2b (C53H9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000007152 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1832898:1834747:1 11/11 None
SNAP00000007149 ENSEMBL cdna:SNAP chromosome:CEL140:I:1833494:1834747:1 11/11 None
C53H9.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:1832891:1834754:1 gene:C53H9.2 11/11 None
C53H9.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:1832898:1834754:1 gene:C53H9.2 11/11 None
C53H9.2b ENSEMBL cdna:known chromosome:CEL140:I:1833494:1834747:1 gene:C53H9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025889 4/11 Cross Hyb Matching Probes None
C53H9.2c.1 8/11 Cross Hyb Matching Probes None
C53H9.2c.2 4/11 Cross Hyb Matching Probes None
C53H9.2c.3 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171749 3 2 NM_170804 181076_at (11)
NM_170805 181076_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1833041-1834747(+) 100.0 100.0
Public Domain and Genome References
Ensembl C53H9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68267 Hypothetical protein C53H9.2a [Caenorhabditis elegans] ref|NP_740787.1| C53H9.2a [Caenorhabditis elegans] 0.0
blast AAL65781 Hypothetical protein C53H9.2b [Caenorhabditis elegans] ref|NP_740788.1| C53H9.2b [Caenorhabditis elegans] 0.0
blast CAE74467 Hypothetical protein CBG22213 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 8.3E-112
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 8.3E-112
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 1.8E-77
Sequence
Target Sequence 
>C. ELEGANS:181076_AT
gtgattgtcccggacttgtcatgccttctttctcttttggacgaagcgaaatgtttttaa
acggtattcttcccgttgatcaaatgcgtgaccacttcggcccaacgtcgcttctactct
cccgtgttccagttcatgtcatcgaggcgacatactcgattatgctgccagagatgcaaa
gtccttctgcaatcaacttgcttaactcgctcgcgttcatgagaggatttatggcgtcgt
cgggaattccggattgttccagagccgcgaggctgatgttcaaggatgttgtcagtggaa
aattgatttgggcagccgcacctcccggagttgagcaagaagagtttgaccgaatctcct
atccagacaagaagactcgtgatattggtcgggtgcagatggaaaagcttgccaagcttc
agcttctcgagggtgatgagttgaagggatcacaatttgactctcaacactttgtcggat
caatcggagttgctcatgtcagagattcaaaagcattgcctcaaacgttaggaaccgtca
ttccaactgctcctaccgaaaacaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTGTCCCGGACTTGTCATGCC 666 483 911 Antisense
GGTATTCTTCCCGTTGATCAAATGC 655 505 973 Antisense
GATCAAATGCGTGACCACTTCGGCC 427 421 988 Antisense
GTGTTCCAGTTCATGTCATCGAGGC 624 483 1034 Antisense
CAATCAACTTGCTTAACTCGCTCGC 130 181 1100 Antisense
GAGAGGATTTATGGCGTCGTCGGGA 681 395 1131 Antisense
ATTCCGGATTGTTCCAGAGCCGCGA 190 9 1156 Antisense
AGAGTTTGACCGAATCTCCTATCCA 387 67 1251 Antisense
GACTCTCAACACTTTGTCGGATCAA 194 373 1369 Antisense
TTAGGAACCGTCATTCCAACTGCTC 527 679 1438 Antisense
CCAACTGCTCCTACCGAAAACAATG 524 275 1453 Antisense
Sequence Source Affymetrix Proprietary Database