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[181075_at] 7TM chemoreceptor, srx family

Description F31F4.2 /REP_DB=WormBase Gene ID /WP=CE09822 /TR=O17138 /GB=AAG24086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 1.3
(-3)
A 		9
(3)
A 		5.9
(0.6)
A 		7.4
(1.8)
A 		8
B 6.2
(3)
A 		3
(-1.2)
A 		1.6
(-3)
A 		1.8
(-2.7)
A 		5
C 11.5
(-2.3)
A 		5
(-3)
A 		10.8
(-2.3)
A 		58.4
(3)
A 		53
avr 6.3
(-2.8) 		5.7
(-3) 		6.1
(-2.9) 		22.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.2
(1.8)
A 		1.1
(-3)
A 		4.7
(-1.3)
A 		4.6
(-1.3)
A 		13.6
(3)
A 		2.1
(-2.5)
A 		13
B 2.7
(-1.4)
A 		2.2
(-2)
A 		5.4
(1.8)
A 		3.1
(-1)
A 		6.4
(3)
A 		1.4
(-3)
A 		5
C 3.8
(-2.4)
A 		4.3
(-2.2)
A 		22
(3)
A 		3.2
(-2.5)
A 		1.6
(-3)
A 		4.9
(-2)
A 		20
avr 5.9
(-0.5) 		2.5
(-3) 		10.7
(3) 		3.6
(-2.2) 		7.2
(0.4) 		2.8
(-2.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.5
(-3)
A 		1.9
(3)
A 		1.5
(1.3)
A 		1.1
(-0.4)
A 		1
B 2
(3)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2
C 3.8
(-1.3)
A 		1.4
(-3)
A 		3.8
(-1.3)
A 		9.8
(3)
A 		8
avr 2.1
(-1.1) 		1.3
(-3) 		1.9
(-1.6) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.1
(-0.2)
A 		0.4
(-3)
A 		1
(-2)
A 		1.2
(-1.7)
A 		4.1
(3)
A 		0.5
(-2.8)
A 		4
B 0.9
(-1.9)
A 		0.7
(-2.4)
A 		1.3
(-0.7)
A 		0.8
(-2.1)
A 		2.6
(3)
A 		0.5
(-3)
A 		2
C 1.4
(-1.9)
A 		1.3
(-2.1)
A 		5.6
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		1.6
(-1.7)
A 		5
avr 1.5
(-0.7) 		0.8
(-3) 		2.6
(3) 		0.9
(-2.7) 		2.4
(2.3) 		0.9
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14803
Sequence Type Exemplar sequence
Representative Public ID F31F4.2 NCBI
Target Description F31F4.2 /REP_DB=WormBase Gene ID /WP=CE09822 /TR=O17138 /GB=AAG24086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070892 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-23) (srx-23) mRNA, complete cds. 11/11 None
SNAP00000012371 ENSEMBL cdna:SNAP chromosome:CEL140:V:682307:684820:1 10/11 None
F31F4.2 ENSEMBL cdna:known chromosome:CEL140:V:682161:683724:1 gene:F31F4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:682255-683592(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-23
Ensembl F31F4.2
Entrez Gene 185164 Entrez gene
SwissProt O17138 EMBL-EBI
WormBase CE36539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503293 Serpentine Receptor, class X family member (srx-23) [Caenorhabditis elegans] gb|AAG24086.2| Serpentine receptor, class x protein 23 [Caenorhabditis elegans] 1.0E-154
blast NP_503293 Serpentine Receptor, class X family member (srx-23) [Caenorhabditis elegans] gb|AAG24086.2| Serpentine receptor, class x protein 23 [Caenorhabditis elegans] 1.0E-117
blast NP_503292 Serpentine Receptor, class X family member (srx-22) [Caenorhabditis elegans] gb|AAG24087.2| Serpentine receptor, class x protein 22 [Caenorhabditis elegans] 2.0E-81
blast CAE62226 Hypothetical protein CBG06278 [Caenorhabditis briggsae] 5.0E-76
blast NP_503292 Serpentine Receptor, class X family member (srx-22) [Caenorhabditis elegans] gb|AAG24087.2| Serpentine receptor, class x protein 22 [Caenorhabditis elegans] 1.0E-61
blast CAE62226 Hypothetical protein CBG06278 [Caenorhabditis briggsae] 1.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503293.2 7 5-27,47-69,84-106,126-148,168-190,223-245,249-271
F31F4.2 7 5-27,47-69,84-106,126-148,168-190,223-245,249-271
SNAP00000012371 4 20-42,52-74,95-117,137-159
Sequence
Target Sequence 
>C. ELEGANS:181075_AT
gtcaaacatcccaattcttatcacaaattcaagatacatcggccttgcctctattatatt
acacgaatgctcaaatatgctcagcctcctgatggctctcaaccgttttttcgcagtatt
ctggtaccttcgatacaatcgaattttctcgaattccaacacgaccttcatgaaaaattt
tggcggactagttttcgctgtgatttattacattttatacgactatcttggctgcttctt
ttactatgagaaaagtagttacacgttctggcttgtggacactccactgtgttatagtgt
gtcctggtactcggatattttattcaacaattcgctagtagtattcacgcttgcaattaa
tttgataacggtctacaaagcaggaaaaagcaatcgaaacttgctccaagccgccggagc
acaaatgacaaagaggaaccggcagagagaattgggttttataaagcaatcgtttgctca
gggagccgtgatatttggagggcaatgcgtttattacgtgggcgcggtttttgtgaccaa
ttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAACATCCCAATTCTTATCACA 104 465 168 Antisense
ATACATCGGCCTTGCCTCTATTATA 93 25 201 Antisense
CTCTCAACCGTTTTTTCGCAGTATT 322 231 263 Antisense
TCGCAGTATTCTGGTACCTTCGATA 462 599 278 Antisense
TCGAATTCCAACACGACCTTCATGA 289 593 316 Antisense
ACTATCTTGGCTGCTTCTTTTACTA 615 101 389 Antisense
GTTACACGTTCTGGCTTGTGGACAC 25 447 425 Antisense
TAGTGTGTCCTGGTACTCGGATATT 308 653 462 Antisense
TTCGCTAGTAGTATTCACGCTTGCA 221 697 498 Antisense
GCAATCGAAACTTGCTCCAAGCCGC 33 321 557 Antisense
GGCGCGGTTTTTGTGACCAATTCGG 28 537 688 Antisense
Sequence Source Affymetrix Proprietary Database