[Home] | [Total List]

[181073_at]

Description C02H7.1 /REP_DB=WormBase Gene ID /WP=CE06757 /TR=Q17595 /GB=AAC47924.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 55.1
(1.3)
A 		2.9
(-3)
A 		6.9
(-2.7)
A 		75.1
(3)
A 		72
B 45.1
(3)
A 		3.4
(-3)
A 		6.3
(-2.6)
A 		12.6
(-1.7)
A 		42
C 83.3
(3)
A 		13.6
(-2.5)
A 		7
(-3)
A 		39.5
(-0.4)
A 		76
avr 61.2
(3) 		6.6
(-3) 		6.7
(-3) 		42.4
(0.9) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 5.7
(-3)
A 		9
(-2.4)
A 		9
(-2.4)
A 		15.3
(-1.2)
A 		6.6
(-2.8)
A 		37.1
(3)
A 		31
B 21.5
(1.6)
A 		9
(-1.6)
A 		6.2
(-2.3)
A 		3.5
(-3)
A 		10
(-1.3)
A 		27.1
(3)
A 		24
C 12.7
(-1.8)
A 		17.3
(-1.2)
A 		49.1
(2.8)
A 		3.6
(-3)
A 		5
(-2.8)
A 		50.4
(3)
A 		47
avr 13.3
(-1.8) 		11.8
(-2.1) 		21.4
(-0.3) 		7.5
(-2.9) 		7.2
(-3) 		38.2
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 20.1
(3)
A 		0.6
(-3)
A 		1.8
(-2.6)
A 		11
(0.2)
A 		20
B 14.4
(3)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		2.7
(-2.2)
A 		14
C 27.6
(3)
A 		3.9
(-2.6)
A 		2.4
(-3)
A 		6.7
(-2)
A 		25
avr 20.7
(3) 		1.8
(-3) 		1.9
(-3) 		6.8
(-1.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1
(-3)
A 		3.2
(-1.4)
A 		2
(-2.3)
A 		3.9
(-0.8)
A 		2
(-2.3)
A 		9
(3)
A 		8
B 7.5
(1.3)
A 		3
(-1.6)
A 		1.5
(-2.6)
A 		0.9
(-3)
A 		4
(-1)
A 		10.1
(3)
A 		9
C 4.7
(-1.5)
A 		5.3
(-1.3)
A 		12.5
(1.4)
A 		0.7
(-3)
A 		1.6
(-2.7)
A 		16.9
(3)
A 		16
avr 4.4
(-1.5) 		3.8
(-1.8) 		5.3
(-0.9) 		1.8
(-3) 		2.5
(-2.6) 		12
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18479
Sequence Type Exemplar sequence
Representative Public ID C02H7.1 NCBI
Target Description C02H7.1 /REP_DB=WormBase Gene ID /WP=CE06757 /TR=Q17595 /GB=AAC47924.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075748 NCBI Caenorhabditis elegans C02H7.1 (C02H7.1) mRNA, complete cds. 11/11 None
C02H7.1 ENSEMBL cdna:known chromosome:CEL140:X:763768:766712:1 gene:C02H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:763767-766649(+) 89.93 90.17
Public Domain and Genome References
Gene Title
Ensembl C02H7.1
Entrez Gene 180421 Entrez gene
SwissProt Q17595 EMBL-EBI
WormBase CE06757 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19309.1.S1_S_AT similar to TNF receptor-associated factor 3 interacting protein 1 cfa
DROSGENOME1:149889_AT dm
DROSOPHILA_2:1641499_AT dm
HG-U95AV2:40216_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U133A:214458_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U133_PLUS_2:214458_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U133A_2:214458_AT TNF receptor-associated factor 3 interacting protein 1 hs
HU35KSUBA:N75889_F_AT TNF receptor-associated factor 3 interacting protein 1 hs
HU35KSUBC:RC_N22113_F_AT TNF receptor-associated factor 3 interacting protein 1 hs
HU35KSUBD:RC_AA169400_AT TNF receptor-associated factor 3 interacting protein 1 hs
U133_X3P:HS.43086.0.A1_3P_AT TNF receptor-associated factor 3 interacting protein 1 hs
U133_X3P:HS.152701.0.S1_3P_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U133_PLUS_2:238494_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U133B:238494_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U95C:53119_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U95AV2:39202_AT TNF receptor-associated factor 3 interacting protein 1 hs
HG-U95D:87973_AT TNF receptor-associated factor 3 interacting protein 1 hs
HU35KSUBD:RC_AA609632_AT TNF receptor-associated factor 3 interacting protein 1 hs
MG-U74BV2:116539_AT TNF receptor-associated factor 3 interacting protein 1 mm
MOE430B:1452887_AT TNF receptor-associated factor 3 interacting protein 1 mm
MOUSE430_2:1452887_AT TNF receptor-associated factor 3 interacting protein 1 mm
Protein Similarities
Method ID Description E-Value
blast AAC47924 Hypothetical protein C02H7.1 [Caenorhabditis elegans] ref|NP_508149.1| C02H7.1 [Caenorhabditis elegans] 1.0E-178
blast CAE74341 Hypothetical protein CBG22059 [Caenorhabditis briggsae] 2.0E-68
blast NP_082994 TNF receptor-associated factor 3 interacting protein 1 [Mus musculus] gb|AAT72918.1| microtubule-interacting protein associated with TRAF3 [Mus musculus] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:181073_AT
gccagcgcctccaaaactgaaaaagaaacaaattgcgactgttgactcaacgccacaagt
ggtagtcgaactcaaatcggaaatcatcagcgatgctccaaaagtggaaaccgaagacga
tagcaattttataatggaaaatgacgaggaagatggtgatagaaccgctagaattgaaga
tttagttgatgaagaagatagaggagctttggtgcaaaaaatcatggagacgaaggctga
aattgaagatggaggaggacaggatcaggttgaagagtccgatgctgataaaattatgac
agttgaaagagaaaagatgaagcaactgcaggagaagcttcaggatttaacaagatctgc
ttatccgctagcaaggctttttgattttgcaaatgacgacatcgaatcaatgattaaaga
actggagcgatggagaagtgagcagcgacggaatgagcaagaggatcagaacaaaaaagc
ggcaggattcggagacagcagtagactctacaacatcatcgcaaacttacaaaaagaaat
caatgacacgaaagaagaattgagcaaggctagaggacgagttctcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGCGCCTCCAAAACTGAAAAAG 516 277 993 Antisense
TTGCGACTGTTGACTCAACGCCACA 252 683 1025 Antisense
ACGCCACAAGTGGTAGTCGAACTCA 275 83 1042 Antisense
TCGGAAATCATCAGCGATGCTCCAA 364 607 1069 Antisense
TAACAAGATCTGCTTATCCGCTAGC 667 639 1340 Antisense
GCTTATCCGCTAGCAAGGCTTTTTG 603 301 1351 Antisense
GCGATGGAGAAGTGAGCAGCGACGG 169 291 1419 Antisense
AAGCGGCAGGATTCGGAGACAGCAG 94 151 1469 Antisense
TCGGAGACAGCAGTAGACTCTACAA 710 601 1481 Antisense
GACTCTACAACATCATCGCAAACTT 641 373 1496 Antisense
AAGGCTAGAGGACGAGTTCTCAACA 421 159 1558 Antisense
Sequence Source Affymetrix Proprietary Database