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[181071_at]

Description E02H9.7 /REP_DB=WormBase Gene ID /WP=CE09124 /TR=Q9TZA1 /GB=AAC68772.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 51      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 38.9
(3)
A 		36.3
(2.5)
A 		10.5
(-3)
A 		19.6
(-1.1)
A 		28
B 10.2
(-2.8)
A 		45.9
(2.7)
A 		48.1
(3)
A 		8.6
(-3)
A 		40
C 43
(3)
A 		39.7
(1.5)
A 		29.6
(-3)
A 		35.6
(-0.3)
A 		13
avr 30.7
(-0.1) 		40.6
(3) 		29.4
(-0.5) 		21.3
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 64.9
(3)
A 		10.5
(-3)
A 		18.3
(-2.1)
A 		14.1
(-2.6)
A 		19.6
(-2)
A 		38.9
(0.1)
A 		54
B 27.7
(-0.6)
A 		14.1
(-3)
A 		21
(-1.8)
A 		25.5
(-1)
A 		48.7
(3)
A 		35.8
(0.8)
A 		35
C 5.3
(-2.8)
A 		66.6
(3)
A 		3.4
(-3)
A 		31.7
(-0.3)
A 		51.8
(1.6)
A 		34.7
(-0)
A 		63
avr 32.6
(1.3) 		30.4
(0.8) 		14.2
(-3) 		23.8
(-0.8) 		40
(3) 		36.5
(2.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.2
(3)
A 		7.9
(-0.3)
A 		2.7
(-3)
A 		2.9
(-2.9)
A 		12
B 3.3
(-2.1)
A 		11.3
(3)
A 		11.1
(2.9)
A 		1.8
(-3)
A 		10
C 14.2
(3)
A 		11.4
(1)
A 		10.3
(0.1)
A 		6
(-3)
A 		8
avr 10.6
(3) 		10.2
(2.7) 		8
(0.8) 		3.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 12
(3)
A 		3.7
(-2.9)
A 		4
(-2.7)
A 		3.6
(-3)
A 		5.9
(-1.4)
A 		9.5
(1.2)
A 		8
B 9.6
(-1.1)
A 		4.7
(-3)
A 		5.1
(-2.8)
A 		6.8
(-2.2)
A 		19.8
(3)
A 		13.4
(0.5)
A 		15
C 1.9
(-2.7)
A 		20.3
(3)
A 		0.9
(-3)
A 		6.4
(-1.3)
A 		16.8
(1.9)
A 		11.6
(0.3)
A 		19
avr 7.8
(-0.5) 		9.6
(0.5) 		3.3
(-3) 		5.6
(-1.7) 		14.2
(3) 		11.5
(1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7219
Sequence Type Exemplar sequence
Representative Public ID E02H9.7 NCBI
Target Description E02H9.7 /REP_DB=WormBase Gene ID /WP=CE09124 /TR=Q9TZA1 /GB=AAC68772.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065156 NCBI Caenorhabditis elegans E02H9.7 (E02H9.7) mRNA, complete cds. 11/11 None
SNAP00000038952 ENSEMBL cdna:SNAP chromosome:CEL140:III:2443904:2444329:-1 9/11 None
E02H9.7 ENSEMBL cdna:known chromosome:CEL140:III:2443904:2445662:-1 gene:E02H9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038953 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038959 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2443903-2445662(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H9.7
Entrez Gene 184002 Entrez gene
SwissProt Q9TZA1 EMBL-EBI
WormBase CE09124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68772 Hypothetical protein E02H9.7 [Caenorhabditis elegans] ref|NP_497557.1| E02H9.7 [Caenorhabditis elegans] 9.0E-69
blast AAC68772 Hypothetical protein E02H9.7 [Caenorhabditis elegans] ref|NP_497557.1| E02H9.7 [Caenorhabditis elegans] 3.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000038952 1 121-140
Sequence
Target Sequence 
>C. ELEGANS:181071_AT
actatggcattctctactaccagcactactgtagaagtgacaaccactcaatctacctcc
cgcttaactggtgcccctgaagattctgattcaaaagcatcatcttccctcaacaaatgg
tggaaaagtaaatcccaaggaactcctggatctaaatgcccaaaggactattacaataat
gacggactatgctctcctgttaaggctactacgacacctactccggatactgctgagact
tcacctgaagtgttagcttcctccacgtccactgtagtcgcatctaccactagtgaaact
cctacaacaccagctccggtgacatcggccaaggaggaactatcttcaacatctactgtg
gcatcctctactatcaatactaatgtaaaagagacaaccaccccatcggcctcccgctta
actgatgcccctgcaaaagattccgaatcgaaagcatcatcttccttgttcgtatttcct
atcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATGGCATTCTCTACTACCAGCA 340 97 283 Antisense
TAACTGGTGCCCCTGAAGATTCTGA 454 639 347 Antisense
GGAACTCCTGGATCTAAATGCCCAA 596 529 421 Antisense
GACTATGCTCTCCTGTTAAGGCTAC 542 371 467 Antisense
TTAAGGCTACTACGACACCTACTCC 329 637 482 Antisense
CACCTACTCCGGATACTGCTGAGAC 79 201 497 Antisense
TCCACTGTAGTCGCATCTACCACTA 463 589 550 Antisense
GGAACTATCTTCAACATCTACTGTG 542 529 618 Antisense
TACTGTGGCATCCTCTACTATCAAT 676 645 636 Antisense
ATCGAAAGCATCATCTTCCTTGTTC 42 37 729 Antisense
TCCTTGTTCGTATTTCCTATCATTC 451 591 745 Antisense
Sequence Source Affymetrix Proprietary Database