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[181070_at]

Description F18A11.4 /REP_DB=WormBase Gene ID /WP=CE20689 /TR=Q9XTB1 /GB=CAB04136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 37
(-1.2)
A 		31.4
(-1.6)
A 		12.7
(-3)
A 		94
(3)
A 		81
B 20.6
(-3)
A 		21.6
(-2.9)
A 		23.8
(-2.7)
A 		77
(3)
A 		56
C 40.7
(1.2)
A 		13.7
(-3)
A 		36.2
(0.5)
A 		52.5
(3)
M 		39
avr 32.8
(-1.8) 		22.2
(-3) 		24.2
(-2.8) 		74.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 41.9
(3)
A 		39.6
(2.4)
A 		31.6
(0.4)
A 		24.4
(-1.4)
A 		17.9
(-3)
A 		41
(2.8)
A 		24
B 35.3
(1.5)
A 		39
(2.4)
A 		41.5
(3)
A 		16.2
(-3)
A 		16.7
(-2.9)
A 		21.6
(-1.7)
A 		25
C 21.6
(-3)
A 		35
(-1.3)
A 		21.8
(-3)
A 		68.3
(3)
A 		23.4
(-2.8)
A 		58.1
(1.7)
A 		47
avr 32.9
(0.9) 		37.9
(2.3) 		31.6
(0.5) 		36.3
(1.9) 		19.3
(-3) 		40.2
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.5
(2.8)
A 		6.8
(-1)
A 		3.3
(-3)
A 		13.8
(3)
A 		11
B 6.6
(-2.3)
A 		5.3
(-3)
A 		5.5
(-2.9)
A 		16.4
(3)
A 		11
C 13.5
(3)
A 		3.9
(-3)
A 		12.6
(2.4)
A 		8.9
(0.1)
M 		10
avr 11.2
(1.6) 		5.3
(-3) 		7.1
(-1.6) 		13
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.7
(-1.4)
A 		14.1
(3)
A 		6.9
(-2)
A 		6.2
(-2.4)
A 		5.4
(-3)
A 		10
(0.2)
A 		9
B 12.3
(2.5)
A 		13
(3)
A 		10.1
(1)
A 		4.3
(-3)
A 		6.8
(-1.3)
A 		8.1
(-0.4)
A 		9
C 8
(-2)
A 		10.7
(-0.8)
A 		5.6
(-3)
A 		13.7
(0.5)
A 		7.6
(-2.1)
A 		19.5
(3)
A 		14
avr 9.3
(-0.3) 		12.6
(3) 		7.5
(-2.1) 		8.1
(-1.5) 		6.6
(-3) 		12.5
(2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3087
Sequence Type Exemplar sequence
Representative Public ID F18A11.4 NCBI
Target Description F18A11.4 /REP_DB=WormBase Gene ID /WP=CE20689 /TR=Q9XTB1 /GB=CAB04136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064369 NCBI Caenorhabditis elegans F18A11.4 (F18A11.4) mRNA, complete cds. 11/11 None
F18A11.4 ENSEMBL cdna:known chromosome:CEL140:II:13022854:13025529:-1 gene:F18A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13022850-13025526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A11.4
Entrez Gene 174944 Entrez gene
SwissProt Q9XTB1 EMBL-EBI
WormBase CE20689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21639 Hypothetical protein F18A11.4 [Caenorhabditis elegans] emb|CAB04136.1| Hypothetical protein F18A11.4 [Caenorhabditis elegans] ref|NP_496770.1| F18A11.4 [Caenorhabditis elegans] 4.0E-89
blast CAE59429 Hypothetical protein CBG02801 [Caenorhabditis briggsae] 5.0E-54
Sequence
Target Sequence 
>C. ELEGANS:181070_AT
gatgtggacgttcagttgaccggacaagtcacggaacatttgaggaatttgcagtgtagt
aatggttccgcaacttccccatctacatcagtgtcagcttcatcttcttctgctcgtcca
ctgacaaatggaaataatcatctttccacggcgtcgtctaccgacacatctctctcatta
tcggaaaggaataacgttccgtctccagctccagttccatatagtgaaagtgctccacaa
ctgaaaacattcaccggagagactccaaaactgcatccacgatctccgttcccgcctcaa
ccgccagttcttccgcaacgaagcaaaaccgcatcggcagtggcgacgacgacgacgaat
ccgacgacttcgaatggagcaccaccaccagttcctggatcgaaaggacccccggtgcca
ccgaaaccatcgacttcagttatctcttttcgtgagtgttcactgatttgtgttttgatt
tatgttgttcgtcaaatttgtagatttgatcttctcacttccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGGACGTTCAGTTGACCGGAC 69 343 199 Antisense
TGTAGTAATGGTTCCGCAACTTCCC 241 559 253 Antisense
TACATCAGTGTCAGCTTCATCTTCT 309 645 282 Antisense
TCTTCTGCTCGTCCACTGACAAATG 402 617 304 Antisense
ACACATCTCTCTCATTATCGGAAAG 438 111 362 Antisense
GGAGAGACTCCAAAACTGCATCCAC 595 517 454 Antisense
AAAACCGCATCGGCAGTGGCGACGA 507 131 523 Antisense
CCACCACCAGTTCCTGGATCGAAAG 669 273 580 Antisense
GAAACCATCGACTTCAGTTATCTCT 448 359 621 Antisense
GTTATCTCTTTTCGTGAGTGTTCAC 473 447 637 Antisense
TAGATTTGATCTTCTCACTTCCAAG 678 651 699 Antisense
Sequence Source Affymetrix Proprietary Database