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[181069_at]

Description T03G6.1 /REP_DB=WormBase Gene ID /WP=CE04866 /TR=Q22128 /GB=AAA81705.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      6grp_highest_nonorm > 54      6grp_total > 61      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2571
1 2 3 4 range
A 82.1
(-3)
A 		1965.3
(1.4)
P 		2626.3
(3)
P 		148.3
(-2.8)
A 		2544
B 98
(-3)
A 		2335.6
(2.7)
P 		2466.4
(3)
P 		96.8
(-3)
A 		2370
C 54.9
(-3)
A 		2206.1
(2.3)
P 		2511.4
(3)
P 		195.2
(-2.7)
A 		2457
avr 78.3
(-3) 		2169
(2.1) 		2534.7
(3) 		146.8
(-2.8) 		2456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1618
1 2 3 4 5 6 range
A 856
(-1.6)
P 		1614.3
(1.2)
P 		1758.6
(1.7)
P 		2097.1
(3)
P 		1036.5
(-0.9)
P 		479.3
(-3)
P 		1618
B 908.6
(-1.5)
P 		1232.3
(-0.1)
P 		1755.6
(2)
P 		1997
(3)
P 		1519.6
(1)
P 		535.9
(-3)
P 		1461
C 961.9
(-1.6)
P 		1369.5
(0.2)
P 		1553.6
(1)
P 		2000.2
(3)
P 		1135.1
(-0.8)
P 		634.9
(-3)
P 		1365
avr 908.8
(-1.5) 		1405.4
(0.5) 		1689.3
(1.6) 		2031.4
(3) 		1230.4
(-0.2) 		550
(-3) 		1481
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 857
1 2 3 4 range
A 29.9
(-2.9)
A 		426.6
(0.7)
P 		686.6
(3)
P 		21.7
(-3)
A 		665
B 31.3
(-2.9)
A 		576.8
(3)
P 		571.5
(2.9)
P 		20.6
(-3)
A 		556
C 18.2
(-3)
A 		634.3
(1.3)
P 		875.3
(3)
P 		32.9
(-2.9)
A 		857
avr 26.5
(-3) 		545.9
(1.6) 		711.1
(3) 		25.1
(-3) 		686

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 157.8
(-2.5)
P 		574.1
(3)
P 		383
(0.5)
P 		531.9
(2.4)
P 		312.8
(-0.4)
P 		116.7
(-3)
P 		457
B 316.2
(-1.3)
P 		410.2
(0)
P 		426.3
(0.3)
P 		528.9
(1.7)
P 		617.4
(3)
P 		199.8
(-3)
P 		418
C 356.5
(1.2)
P 		417.9
(3)
P 		395.4
(2.3)
P 		402.2
(2.5)
P 		367.3
(1.5)
P 		212.5
(-3)
P 		205
avr 276.8
(-1.1) 		467.4
(2.6) 		401.6
(1.3) 		487.7
(3) 		432.5
(1.9) 		176.3
(-3) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18474
Sequence Type Exemplar sequence
Representative Public ID T03G6.1 NCBI
Target Description T03G6.1 /REP_DB=WormBase Gene ID /WP=CE04866 /TR=Q22128 /GB=AAA81705.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076068(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076068 NCBI Caenorhabditis elegans T03G6.1 (T03G6.1) mRNA, complete cds. 10/11 None
SNAP00000022493 ENSEMBL cdna:SNAP chromosome:CEL140:X:2608225:2609829:1 10/11 None
GENEFINDER00000022497 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2608225:2609829:1 11/11 None
T03G6.1 ENSEMBL cdna:known chromosome:CEL140:X:2608221:2609962:1 gene:T03G6.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2608224-2609829(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03G6.1
Entrez Gene 188029 Entrez gene
SwissProt Q22128 EMBL-EBI
WormBase CE35756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81705 Hypothetical protein T03G6.1 [Caenorhabditis elegans] ref|NP_508469.2| T03G6.1 [Caenorhabditis elegans] 0.0
blast CAE58852 Hypothetical protein CBG02076 [Caenorhabditis briggsae] 1.0E-161
blast CAE58852 Hypothetical protein CBG02076 [Caenorhabditis briggsae] 1.0E-158
Sequence
Target Sequence 
>C. ELEGANS:181069_AT
agtactcgaactttgcatcctggagagacactgtcggatttgtcgtcggagataaaaatc
ttttcgagcgcatcactgtcaacagatttgaacttctctcgttcgcatcagacaactctg
atgtcaccgtggaagacgtgaacgttgaaaagctgggccaagttctcgactatgattcgg
aaatttctatttacgatagagaagagttcctcaccgcacttctcaaaactggaggagtat
cagccaaaattgccaaggagaatggacaggtaactgggtacattgtgaataccaatgata
acattctacagtgctacggagaaaatgaaaaaacccaaaaagcacttttctcctctgctg
ctgcaaagatgaacgctaaagtcacaatgtacattcgcaaggatgctggacaacctatgg
atcaattgtcgaaggtcacccgactaaattctctcaaccgtttatattttatttttcaga
ctgctgaaagcagaactccaattaccagactcaacacacgtgtcattgtgagcaccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACTCGAACTTTGCATCCTGGAG 243 63 473 Antisense
ACACTGTCGGATTTGTCGTCGGAGA 704 105 500 Antisense
AAATCTTTTCGAGCGCATCACTGTC 332 117 528 Antisense
AGATTTGAACTTCTCTCGTTCGCAT 546 65 556 Antisense
AAAAGCTGGGCCAAGTTCTCGACTA 377 131 620 Antisense
GATAGAGAAGAGTTCCTCACCGCAC 345 425 667 Antisense
CTCACCGCACTTCTCAAAACTGGAG 666 227 682 Antisense
TTTCTCCTCTGCTGCTGCAAAGATG 332 671 819 Antisense
GAAGGTCACCCGACTAAATTCTCTC 429 333 903 Antisense
GAACTCCAATTACCAGACTCAACAC 264 349 965 Antisense
ACACGTGTCATTGTGAGCACCGTCA 343 109 988 Antisense
Sequence Source Affymetrix Proprietary Database