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[181068_at]

Description F31B12.2 /REP_DB=WormBase Gene ID /WP=CE03282 /TR=Q19927 /GB=CAA90607.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 65.8
(-0.4)
A 		8.8
(-3)
A 		32.7
(-1.9)
A 		139.7
(3)
P 		131
B 65.1
(1)
A 		10.7
(-2.7)
A 		5.9
(-3)
A 		94.3
(3)
P 		88
C 57.4
(-1.3)
A 		18.6
(-2.7)
A 		10
(-3)
A 		178.7
(3)
P 		169
avr 62.8
(-0.6) 		12.7
(-3) 		16.2
(-2.8) 		137.6
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 22.2
(-1.1)
A 		4
(-3)
A 		22.8
(-1.1)
A 		33
(-0)
A 		62.5
(3)
A 		24.1
(-0.9)
A 		59
B 27.3
(-0.9)
A 		35.2
(0.2)
A 		11.7
(-3)
A 		47.2
(1.9)
A 		55.4
(3)
P 		49.6
(2.2)
A 		44
C 3.3
(-3)
A 		54.8
(3)
A 		25.2
(-0.4)
A 		40.1
(1.3)
A 		7.1
(-2.6)
A 		21.7
(-0.9)
A 		52
avr 17.6
(-3) 		31.3
(0.4) 		19.9
(-2.4) 		40.1
(2.6) 		41.7
(3) 		31.8
(0.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 24
(3)
A 		1.9
(-3)
A 		8.5
(-1.2)
A 		20.5
(2)
P 		22
B 20.8
(3)
A 		2.6
(-2.6)
A 		1.4
(-3)
A 		20.1
(2.8)
P 		19
C 19
(0.5)
A 		5.3
(-2.6)
A 		3.5
(-3)
A 		30.1
(3)
P 		27
avr 21.3
(2.3) 		3.3
(-3) 		4.5
(-2.6) 		23.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.1
(-2.1)
A 		1.4
(-3)
A 		5
(-1.8)
A 		8.4
(-0.6)
A 		18.9
(3)
A 		5.9
(-1.5)
A 		18
B 9.5
(-1)
A 		11.7
(-0.3)
A 		2.8
(-3)
A 		12.5
(-0)
A 		22.5
(3)
P 		18.5
(1.8)
A 		20
C 1.2
(-3)
A 		16.7
(3)
A 		6.4
(-1)
A 		8.1
(-0.3)
A 		2.3
(-2.6)
A 		7.3
(-0.6)
A 		16
avr 4.9
(-2.9) 		9.9
(0.2) 		4.7
(-3) 		9.7
(0) 		14.6
(3) 		10.6
(0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17268
Sequence Type Exemplar sequence
Representative Public ID F31B12.2 NCBI
Target Description F31B12.2 /REP_DB=WormBase Gene ID /WP=CE03282 /TR=Q19927 /GB=CAA90607.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077406 NCBI Caenorhabditis elegans F31B12.2 (F31B12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10816891:10825466:-1 10/11 None
F31B12.2 ENSEMBL cdna:known chromosome:CEL140:X:10819935:10825466:-1 gene:F31B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10819934-10825466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31B12.2
Entrez Gene 181275 Entrez gene
SwissProt Q19927 EMBL-EBI
WormBase CE03282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90607 Hypothetical protein F31B12.2 [Caenorhabditis elegans] ref|NP_509807.1| F31B12.2 [Caenorhabditis elegans] 0.0
blast CAE70815 Hypothetical protein CBG17584 [Caenorhabditis briggsae] 0.0
blast CAA90608 Hypothetical protein F31B12.3 [Caenorhabditis elegans] ref|NP_509806.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-9) [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:181068_AT
ggaatgtgcggatgttcttcgtcaaatcctaaactctcctcaacatccaactgtcaagaa
ttggtgtgccgaaataattcatgtagtcagtactcatgtagaagaagaggaaccaacgac
ggcagaaaataatgaacaaattaatgacgagtatctggaagtaagtaatgaaaccaatgt
gtattgttcaggtttagcgcgcgtgtataatagaacaacgaaattgtttcttttcaaagt
tttttgtttgttttatgatatttctgattcatgtttcaaccgttttccctacttttcaca
ttttggctactgttacttttgctatcatggatcgcgagaattgctcgatgaaggcgaggt
gaatgttttccaaactgttacggaaacgtcaccggatacggacacagaatttgttgattc
cgattctgaaaccacgctgcccattgttgaggtgaaagtccctacagatggtactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGTGCGGATGTTCTTCGTCAA 332 533 2706 Antisense
TTCGTCAAATCCTAAACTCTCCTCA 30 695 2723 Antisense
TCTCCTCAACATCCAACTGTCAAGA 555 609 2740 Antisense
TATTGTTCAGGTTTAGCGCGCGTGT 142 665 2887 Antisense
TGATTCATGTTTCAACCGTTTTCCC 399 563 2970 Antisense
GGCTACTGTTACTTTTGCTATCATG 345 537 3010 Antisense
AGGCGAGGTGAATGTTTTCCAAACT 40 49 3057 Antisense
GAAACGTCACCGGATACGGACACAG 28 359 3088 Antisense
TGTTGATTCCGATTCTGAAACCACG 239 563 3117 Antisense
CACGCTGCCCATTGTTGAGGTGAAA 235 199 3138 Antisense
GTGAAAGTCCCTACAGATGGTACTG 131 481 3157 Antisense
Sequence Source Affymetrix Proprietary Database