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[181066_at]

Description C30D11.2 /REP_DB=WormBase Gene ID /WP=CE00908 /TR=Q18324 /GB=CAA84643.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 9.3
(-3)
A 		49.6
(0.1)
A 		18.4
(-2.3)
A 		86.2
(3)
A 		77
B 10.3
(-2.8)
A 		9.1
(-3)
A 		46.2
(3)
A 		8.8
(-3)
A 		37
C 7.6
(-3)
A 		50.4
(2.2)
A 		9.9
(-2.7)
A 		57
(3)
A 		49
avr 9.1
(-3) 		36.4
(0.9) 		24.8
(-0.7) 		50.7
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11
(3)
A 		7.7
(-1.5)
A 		7.3
(-2)
A 		6.6
(-3)
A 		7.8
(-1.4)
A 		10.3
(2)
A 		4
B 6.8
(-1.3)
A 		12.7
(1.6)
A 		15.6
(3)
A 		3.3
(-3)
A 		10.4
(0.5)
A 		11.5
(1)
A 		12
C 2.7
(-2.9)
A 		8.8
(1.2)
A 		11.4
(3)
A 		7.1
(0.1)
A 		2.6
(-3)
A 		4.7
(-1.6)
A 		9
avr 6.8
(-1.8) 		9.7
(1.2) 		11.4
(3) 		5.7
(-3) 		6.9
(-1.7) 		8.8
(0.3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.4
(-3)
A 		10.8
(1.8)
A 		4.8
(-2.1)
A 		12.6
(3)
A 		9
B 3.3
(-2)
A 		2.3
(-2.7)
A 		10.7
(3)
A 		1.9
(-3)
A 		9
C 2.5
(-3)
A 		14.5
(3)
A 		3.4
(-2.6)
A 		9.6
(0.6)
A 		12
avr 3.1
(-3) 		9.2
(3) 		6.3
(0.1) 		8
(1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2
(-0.8)
A 		2.7
(3)
A 		1.6
(-3)
A 		1.7
(-2.5)
A 		2.4
(1.4)
A 		2.5
(1.9)
A 		1
B 2.4
(-0.4)
A 		4.2
(2.8)
A 		3.8
(2.1)
A 		0.9
(-3)
A 		4.2
(2.8)
A 		4.3
(3)
A 		3
C 1
(-2.4)
A 		2.7
(2.4)
A 		2.9
(3)
A 		1.4
(-1.3)
A 		0.8
(-3)
A 		1.6
(-0.7)
A 		2
avr 1.8
(-1.4) 		3.2
(3) 		2.8
(1.7) 		1.3
(-3) 		2.5
(0.8) 		2.8
(1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7212
Sequence Type Exemplar sequence
Representative Public ID C30D11.2 NCBI
Target Description C30D11.2 /REP_DB=WormBase Gene ID /WP=CE00908 /TR=Q18324 /GB=CAA84643.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065422 NCBI Caenorhabditis elegans C30D11.2 (C30D11.2) mRNA, complete cds. 11/11 None
SNAP00000030308 ENSEMBL cdna:SNAP chromosome:CEL140:III:4128472:4128846:1 9/11 None
C30D11.2 ENSEMBL cdna:known chromosome:CEL140:III:4128472:4129764:1 gene:C30D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4128471-4129764(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30D11.2
Entrez Gene 183044 Entrez gene
SwissProt Q18324 EMBL-EBI
WormBase CE00908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84643 Hypothetical protein C30D11.2 [Caenorhabditis elegans] ref|NP_497823.1| C30D11.2 [Caenorhabditis elegans] 6.0E-75
blast CAA84643 Hypothetical protein C30D11.2 [Caenorhabditis elegans] ref|NP_497823.1| C30D11.2 [Caenorhabditis elegans] 1.0E-62
blast CAE72878 Hypothetical protein CBG20187 [Caenorhabditis briggsae] 1.0E-32
blast CAE72878 Hypothetical protein CBG20187 [Caenorhabditis briggsae] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:181066_AT
ggactcatcagttcccatgattgacctctcctctggtgacgatgaagaggtagaggtggc
aatgagaagaagctaccttcttccaccggttccagaaagacccgatggttttccatccct
cttattcggaaacggcaatctctctcgatcaactctatcgataaatcaagaaatctcgat
ggctccatcaccattttccgagatcacagtttcatcgcaacgtccactagtggcaagatc
gggatcgaattccagtgagcacaatctccagatcaaggaagctgtgaagaagaagccggt
ggcagatattgctcatgtaagtggaacttttgtgtgtgtgtgtgttcgcggtgcccaaaa
gaacttctaccaaaagtaccttatcgctactcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTCATCAGTTCCCATGATTGAC 496 525 15 Antisense
ACCTCTCCTCTGGTGACGATGAAGA 622 87 38 Antisense
TCCACCGGTTCCAGAAAGACCCGAT 357 585 96 Antisense
TCCATCCCTCTTATTCGGAAACGGC 682 285 126 Antisense
TCGGAAACGGCAATCTCTCTCGATC 303 607 140 Antisense
AATCTCGATGGCTCCATCACCATTT 60 171 186 Antisense
TCACCATTTTCCGAGATCACAGTTT 457 625 202 Antisense
TCATCGCAACGTCCACTAGTGGCAA 710 621 226 Antisense
GAAGCCGGTGGCAGATATTGCTCAT 175 345 306 Antisense
TCGCGGTGCCCAAAAGAACTTCTAC 288 593 360 Antisense
CCAAAAGTACCTTATCGCTACTCCA 125 277 384 Antisense
Sequence Source Affymetrix Proprietary Database