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[181064_at]

Description T07H3.6 /REP_DB=WormBase Gene ID /WP=CE19567 /TR=O76611 /GB=AAC26307.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_high_8_8 > 40      6grp_highest_nonorm > 80      6grp_total > 41      4grp_total > 55      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 344.4
(3)
P 		160.1
(-0.4)
P 		86.5
(-1.8)
P 		18.8
(-3)
A 		326
B 366.8
(3)
P 		126.3
(-1.4)
P 		140.3
(-1.1)
P 		35.6
(-3)
A 		331
C 373.4
(3)
P 		143.6
(-1.8)
P 		123.2
(-2.3)
P 		88
(-3)
P 		285
avr 361.5
(3) 		143.3
(-1.2) 		116.7
(-1.7) 		47.5
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 223.4
(-0.5)
P 		281.4
(0.7)
P 		393.2
(3)
P 		227.9
(-0.4)
P 		123.8
(-2.6)
P 		103.6
(-3)
P 		290
B 329.4
(3)
P 		220.6
(0)
P 		261.6
(1.1)
P 		229.6
(0.3)
P 		143.8
(-2.1)
P 		110.8
(-3)
P 		219
C 234.1
(-0.3)
P 		311
(1.1)
P 		410.5
(3)
P 		295.1
(0.8)
P 		88.7
(-3)
P 		118.4
(-2.4)
P 		322
avr 262.3
(0.7) 		271
(0.9) 		355.1
(3) 		250.9
(0.4) 		118.8
(-2.8) 		110.9
(-3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 125.4
(3)
P 		34.8
(-1.4)
P 		22.6
(-2)
P 		2.7
(-3)
A 		123
B 117
(3)
P 		31.2
(-1.7)
P 		32.5
(-1.6)
P 		7.6
(-3)
A 		109
C 123.6
(3)
P 		41.3
(-1.5)
P 		42.9
(-1.5)
P 		14.8
(-3)
P 		109
avr 122
(3) 		35.8
(-1.6) 		32.7
(-1.7) 		8.4
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 41.2
(-1.7)
P 		100.1
(3)
P 		85.6
(1.8)
P 		57.8
(-0.4)
P 		37.4
(-2)
P 		25.2
(-3)
P 		75
B 114.6
(3)
P 		73.4
(-0.4)
P 		63.5
(-1.2)
P 		60.8
(-1.4)
P 		58.4
(-1.6)
P 		41.3
(-3)
P 		73
C 86.8
(1.6)
P 		94.9
(2.2)
P 		104.5
(3)
P 		59.4
(-0.6)
P 		28.7
(-3)
P 		39.6
(-2.1)
P 		76
avr 80.9
(2) 		89.5
(3) 		84.5
(2.4) 		59.3
(-0.3) 		41.5
(-2.3) 		35.4
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5509
Sequence Type Exemplar sequence
Representative Public ID T07H3.6 NCBI
Target Description T07H3.6 /REP_DB=WormBase Gene ID /WP=CE19567 /TR=O76611 /GB=AAC26307.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061604 NCBI Caenorhabditis elegans T07H3.6 (T07H3.6) mRNA, complete cds. 11/11 A 
SNAP00000009955 ENSEMBL cdna:SNAP chromosome:CEL140:II:1599583:1600702:-1 11/11 None
GENEFINDER00000009963 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1599583:1600720:-1 11/11 None
T07H3.6 ENSEMBL cdna:known chromosome:CEL140:II:1599476:1600719:-1 gene:T07H3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1599581-1600701(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-26
Ensembl T07H3.6
Entrez Gene 173531 Entrez gene
SwissProt O76611 EMBL-EBI
WormBase CE32065 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494005 T07H3.6 [Caenorhabditis elegans] gb|AAC26307.2| Hypothetical protein T07H3.6 [Caenorhabditis elegans] 0.0
blast CAE60939 Hypothetical protein CBG04662 [Caenorhabditis briggsae] 3.0E-37
blast CAE72470 Hypothetical protein CBG19644 [Caenorhabditis briggsae] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.7E-24
Pfam IPR002083 EMBL-EBI MATH 8.7E-24
Sequence
Target Sequence 
>C. ELEGANS:181064_AT
tggcttgactgccatcactttttttgaggacattaaaaataaaattttcgatgatgatat
ggtgtatgtcgatgttgaagtaacaatcacaaaaacatcaggattcgacagaaaaaagct
tcgaaattttgatacacctgaaaatgattggcatgtggttctagtggctggaggtcagaa
attctacgctcggacagtggtgatttgcaatccgaacaccgatatctgtgaacttgatgt
cgccagaggaacagaaatagttttggaaaatgaggaccctttggatctccagatctttct
ggaagctcttcacggggaagatgtgattagcgacaccacactagaaatcatcttgctttt
ggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTTGACTGCCATCACTTTTTTT 22 547 396 Antisense
AAGCTTCGAAATTTTGATACACCTG 177 149 511 Antisense
TTGGCATGTGGTTCTAGTGGCTGGA 645 707 543 Antisense
GAGGTCAGAAATTCTACGCTCGGAC 362 403 566 Antisense
TACGCTCGGACAGTGGTGATTTGCA 134 649 580 Antisense
GATTTGCAATCCGAACACCGATATC 485 427 597 Antisense
GTGAACTTGATGTCGCCAGAGGAAC 537 481 623 Antisense
ATGAGGACCCTTTGGATCTCCAGAT 158 47 665 Antisense
CAGATCTTTCTGGAAGCTCTTCACG 67 207 685 Antisense
GTGATTAGCGACACCACACTAGAAA 274 485 718 Antisense
CACTAGAAATCATCTTGCTTTTGGC 98 197 734 Antisense
Sequence Source Affymetrix Proprietary Database