[Home] | [Total List]

[181062_at]

Description F42A9.9 /REP_DB=WormBase Gene ID /WP=CE07230 /TR=Q20321 /GB=AAB03167.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 11      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 64.7
(-2)
A 		84
(-1.3)
A 		39.9
(-3)
A 		192.7
(3)
M 		153
B 38.2
(-2.6)
A 		61.1
(-1.6)
A 		30.4
(-3)
A 		162
(3)
A 		132
C 69.3
(-2)
A 		63.9
(-2.1)
A 		32.4
(-3)
A 		250.7
(3)
P 		218
avr 57.4
(-2.2) 		69.7
(-1.7) 		34.2
(-3) 		201.8
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 56.7
(0.5)
A 		87.4
(3)
A 		64.5
(1.2)
A 		12.7
(-3)
A 		44.2
(-0.5)
A 		15.5
(-2.8)
A 		75
B 96.7
(3)
A 		82.7
(1.8)
A 		73
(0.9)
A 		52.4
(-0.9)
A 		28.1
(-3)
A 		70.6
(0.7)
A 		69
C 75.2
(1.2)
A 		93.6
(3)
A 		49.8
(-1.4)
A 		89.6
(2.6)
A 		33.2
(-3)
A 		50.1
(-1.3)
A 		60
avr 76.2
(1.7) 		87.9
(3) 		62.4
(0.1) 		51.6
(-1.1) 		35.2
(-3) 		45.4
(-1.8) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 23.6
(1.4)
A 		18.2
(-0.4)
A 		10.4
(-3)
A 		28.2
(3)
M 		18
B 12.2
(-1.9)
A 		15.1
(-1.2)
A 		7.1
(-3)
A 		34.5
(3)
A 		27
C 22.9
(-0.8)
A 		18.4
(-1.6)
A 		11.3
(-3)
A 		42.3
(3)
P 		31
avr 19.6
(-0.6) 		17.2
(-1.2) 		9.6
(-3) 		35
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 10.5
(-1.4)
A 		31.1
(3)
A 		14
(-0.7)
A 		3.2
(-3)
A 		13.3
(-0.8)
A 		3.8
(-2.9)
A 		28
B 33.6
(3)
A 		27.5
(1.4)
A 		17.7
(-1.3)
A 		13.9
(-2.3)
A 		11.4
(-3)
A 		26.3
(1)
A 		22
C 27.9
(2.8)
A 		28.5
(3)
A 		12.7
(-2.3)
A 		18
(-0.5)
A 		10.7
(-3)
A 		16.8
(-0.9)
A 		18
avr 24
(1.3) 		29
(3) 		14.8
(-1.9) 		11.7
(-3) 		11.8
(-3) 		15.6
(-1.6) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9294
Sequence Type Exemplar sequence
Representative Public ID F42A9.9 NCBI
Target Description F42A9.9 /REP_DB=WormBase Gene ID /WP=CE07230 /TR=Q20321 /GB=AAB03167.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069077
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069077 NCBI Caenorhabditis elegans F42A9.9 (F42A9.9) mRNA, complete cds. None
SNAP00000042140 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8638025:8638843:-1 None
F42A9.9 ENSEMBL cdna:known chromosome:CEL140:IV:8638025:8638771:-1 gene:F42A9.9 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8637341-8638798(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A9.9
Entrez Gene 185657 Entrez gene
SwissProt Q7YXH0 EMBL-EBI
WormBase CE38603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ01532 Hypothetical protein F42A9.9 [Caenorhabditis elegans] ref|NP_501478.2| F42A9.9 [Caenorhabditis elegans] 1.0E-119
blast AAQ01532 Hypothetical protein F42A9.9 [Caenorhabditis elegans] ref|NP_501478.2| F42A9.9 [Caenorhabditis elegans] 1.0E-102
blast T29310 hypothetical protein F42A9.9 - Caenorhabditis elegans 4.0E-89
blast T29310 hypothetical protein F42A9.9 - Caenorhabditis elegans 6.0E-82
blast CAE60007 Hypothetical protein CBG03506 [Caenorhabditis briggsae] 4.0E-76
blast CAE60007 Hypothetical protein CBG03506 [Caenorhabditis briggsae] 5.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501478.2 4 13-35,45-62,75-97,112-134
F42A9.9 3 13-31,41-63,84-106
SNAP00000042140 4 13-35,45-62,75-97,112-134
Sequence
Target Sequence 
>C. ELEGANS:181062_AT
atctcatgactggggcaaggctcttcctgaagctgagaggcatcaaatgtgcaagttcaa
taatggcttatgtactttggaaaattgtacaagaagtggttatggtgccggcgttggtag
ttttcagtttcatctgtgttgataaatatcttcgaagttggacgaatgcaaaccgcggag
ttcaaatattacttattgtatggacgtatgcaatatattctctatttttaataatatttt
tgggatggcttgcacgttttctatggcaacttcaagtcagtaactcgtcgaacgacaaaa
atgaaaatggtacaactatatcgtttatagatggattccattctgaagctgatcatcaag
agcttctattagatactgtaacaacaacttctgcagaggttgaagccaaggttcaccgtc
aacttgaactgggattggttcgtctccgagtatcacaattcgaacatgtcgacattgagc
aattcgatggttttggagacgaactgcatttgggacacgactcgttgccacgtggatcac
gccgaacagtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCATGACTGGGGCAAGGCTCTT 708 31 119 Antisense
GCAAGGCTCTTCCTGAAGCTGAGAG 242 321 133 Antisense
AGAAGTGGTTATGGTGCCGGCGTTG 49 75 210 Antisense
GGCGTTGGTAGTTTTCAGTTTCATC 279 541 228 Antisense
GGACGAATGCAAACCGCGGAGTTCA 494 513 278 Antisense
TGGGATGGCTTGCACGTTTTCTATG 639 553 359 Antisense
GGATTCCATTCTGAAGCTGATCATC 165 509 451 Antisense
GAAGCCAAGGTTCACCGTCAACTTG 439 257 520 Antisense
AACTGGGATTGGTTCGTCTCCGAGT 530 141 545 Antisense
TGCATTTGGGACACGACTCGTTGCC 131 575 623 Antisense
CACGTGGATCACGCCGAACAGTGCA 258 199 647 Antisense
Sequence Source Affymetrix Proprietary Database